View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_68 (Length: 253)
Name: NF10579_low_68
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 18277589 - 18277824
Alignment:
| Q |
1 |
tcttaatcgattctctacactactaaccaacaatctaggacaccgcaagattgatttttgaacatcatggtaaggaatttcaacctcattgagaagaaaa |
100 |
Q |
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| T |
18277589 |
tcttaatcgattctctacactactaaccaacaatctaggacaccgcaagatcgatttgtgaacatcatggtaaggaatttcaacctcattgagaagaaaa |
18277688 |
T |
|
| Q |
101 |
tcaagaagggggtaaatatcactatgcggttcacacgtgagaagttcaggaagcatatcaagaattcgacccatttggcttctgtgtatgccaattgttg |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18277689 |
tcaagaagggggtaaatatcactatacggttcacacgtgagaagttcaggaagcatatcaagaattcgacccatttggcttctgtgtatgccaattgatg |
18277788 |
T |
|
| Q |
201 |
aaagacattgttctacagattttatggttcttaaag |
236 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
18277789 |
aaagacattgttctacagattttagggttcttaaag |
18277824 |
T |
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