View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_69 (Length: 251)
Name: NF10579_low_69
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38312228 - 38311992
Alignment:
| Q |
1 |
cctctttctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaa |
100 |
Q |
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| T |
38312228 |
cctctttctttcaaccatcttcttacagttttaggtcctgaacaagttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaa |
38312129 |
T |
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| Q |
101 |
tggaattgttttctcaagaaatatatagtgtgtgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaactgattatatatgttgacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38312128 |
tggaattgttttctcaagaaatatatagtgtgcgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaattgattatatatgttgacaac |
38312029 |
T |
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| Q |
201 |
atcgtcaaattgatctgaatgacaaattggtggactc |
237 |
Q |
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| T |
38312028 |
atcgtcaaattgatctgaatgacaaattggtggactc |
38311992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 38268420 - 38268316
Alignment:
| Q |
7 |
tctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaat |
106 |
Q |
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| T |
38268420 |
tctttcaaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaat |
38268321 |
T |
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| Q |
107 |
tgttt |
111 |
Q |
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| T |
38268320 |
tgttt |
38268316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 38268246 - 38268167
Alignment:
| Q |
151 |
taatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctgaatgacaaattgg |
230 |
Q |
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| T |
38268246 |
taatagagttgttcatagcgtagtaaaaatttattgtaaaccttgacaacatcgtcaaattcatctgaatgagaaattgg |
38268167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 31707668 - 31707711
Alignment:
| Q |
3 |
tctttctttcaaccatcttcttacagttttaggtcctgaacaag |
46 |
Q |
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| T |
31707668 |
tctttctttcaaccatcttcctactgttttaggtcctgaacaag |
31707711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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