View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_7 (Length: 428)
Name: NF10579_low_7
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 180976 - 181377
Alignment:
| Q |
19 |
aatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttg |
118 |
Q |
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| T |
180976 |
aatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttg |
181075 |
T |
|
| Q |
119 |
aatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtc |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
181076 |
aattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtc |
181175 |
T |
|
| Q |
219 |
tcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatg |
318 |
Q |
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| T |
181176 |
tcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatg |
181275 |
T |
|
| Q |
319 |
atgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttctt |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181276 |
atgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttctt |
181375 |
T |
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| Q |
419 |
ct |
420 |
Q |
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| T |
181376 |
ct |
181377 |
T |
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Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 1701402 - 1701804
Alignment:
| Q |
18 |
caatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatctt |
117 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1701402 |
caatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatctt |
1701501 |
T |
|
| Q |
118 |
gaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
1701502 |
gaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagt |
1701601 |
T |
|
| Q |
218 |
ctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaat |
317 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
1701602 |
ctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaat |
1701701 |
T |
|
| Q |
318 |
gatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttct |
417 |
Q |
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|||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
1701702 |
gatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatattaataaaagtcataagcttcctttttctgtttct |
1701801 |
T |
|
| Q |
418 |
tct |
420 |
Q |
| |
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||| |
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|
| T |
1701802 |
tct |
1701804 |
T |
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