View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_70 (Length: 251)
Name: NF10579_low_70
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15802182 - 15802419
Alignment:
| Q |
1 |
aacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaag |
100 |
Q |
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| T |
15802182 |
aacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaag |
15802281 |
T |
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| Q |
101 |
aggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgttttgacgttttcatggttgaannnnnnncagtaaccattccaa |
200 |
Q |
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| T |
15802282 |
aggaagaaatgaaggaaaatgaagcttagaaaccttgtagtacaagtcatgttgtgttttgacattttcatggttgaatttttttcattaaccattccaa |
15802381 |
T |
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| Q |
201 |
gaattttgttggacataacaatttctgtattttgttct |
238 |
Q |
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| T |
15802382 |
gaattttattggacataacaatttctgtattttgttct |
15802419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 15794383 - 15794559
Alignment:
| Q |
1 |
aacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaag |
100 |
Q |
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| T |
15794383 |
aacgttggattggtacgaagcgttgagtattttttgagttgaattctcgcaaacactatacatataaaatggtgattgtgcagttgttaggatcatgaag |
15794482 |
T |
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| Q |
101 |
aggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgttttgacgttttcatggttga |
177 |
Q |
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| T |
15794483 |
aggaggagattaaggagaatgaagcttagaaaccttgtagtataagtcatgttgtgtggtgacgttttcattgttga |
15794559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 15807801 - 15807958
Alignment:
| Q |
1 |
aacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaag |
100 |
Q |
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|||||||||||| ||||||||||| | ||||||||| || |||||||||||| |||||||| ||||||||||||||| ||| | ||||| |||||||| |
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| T |
15807801 |
aacgttggattgatatgaagtgttgactgttttttcagtagaattctggcaataactgtacatgtaaaatggtgattgcgcattcgttagcgtcatgaag |
15807900 |
T |
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| Q |
101 |
aggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgtt |
158 |
Q |
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| T |
15807901 |
aggaagtgatgaagtagaatgaagcttagaaaccttgtagtacaagtcatgttgtgtt |
15807958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15815674 - 15815823
Alignment:
| Q |
1 |
aacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaag |
100 |
Q |
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|||||||||| ||||||| ||||| |||||||||||||||||||||||||| | | || |||| |||||||||||||| |||||| | ||||| |
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| T |
15815674 |
aacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgtaatatggtgattgtgcatttgttaag---gtgaag |
15815770 |
T |
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| Q |
101 |
aggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgtt |
153 |
Q |
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| T |
15815771 |
agaaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgtt |
15815823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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