View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_72 (Length: 249)

Name: NF10579_low_72
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_72
NF10579_low_72
[»] chr5 (12 HSPs)
chr5 (1-237)||(16397476-16397712)
chr5 (21-237)||(15347829-15348045)
chr5 (24-233)||(16404097-16404306)
chr5 (20-237)||(15358097-15358314)
chr5 (21-229)||(16414821-16415029)
chr5 (53-236)||(15452503-15452686)
chr5 (55-237)||(15428660-15428842)
chr5 (21-188)||(15336456-15336623)
chr5 (7-237)||(15083760-15083988)
chr5 (23-105)||(17928427-17928509)
chr5 (7-173)||(15331991-15332157)
chr5 (126-181)||(30476399-30476454)
[»] chr3 (1 HSPs)
chr3 (21-182)||(8187929-8188090)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16397476 - 16397712
Alignment:
Q  1 caggacttcttagttgccccttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16397476 caggacttcttagttgccccttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttga 16397575  T
Q  101 ctatcttgtcatgattgaagacgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16397576 ctatcttgtcatgattgaagacgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagc 16397675  T
Q  201 atcaccaaccaaaaagtctacaattttatccttatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  16397676 atcaccaaccaaaaagtctacaattttatccttatct 16397712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 15347829 - 15348045
Alignment:
Q  21 ttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaag 120  Q
    |||||||||||||||||||||||| || | | ||||||||||||||||||| ||||||||| ||| |||||||| |||||||| ||| |||||||||||     
T  15347829 ttctatgatggcttttgtcattctcttcaaactgaaatcttctgaaacgcatacccaaattcttagctcaaagtagttgactaccttctcatgattgaac 15347928  T
Q  121 acgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagcatcaccaaccaaaaagtcta 220  Q
    || | ||| |||||||||||||| || ||||||||||  || ||||||||||| || ||||| |||||       ||||||||| |||||||||||||||    
T  15347929 acaatttgggcaagtgttgttttcccaagtccacctaaaccgacaattggataaactgataaatcctcaaaactagaagcatcatcaaccaaaaagtcta 15348028  T
Q  221 caattttatccttatct 237  Q
    ||||||||  |||||||    
T  15348029 caattttactcttatct 15348045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 16404097 - 16404306
Alignment:
Q  24 tatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaagacg 123  Q
    |||||| ||||||| ||||||||| ||| |||||||||| |||||   |||||||||| |||| |||||||||||||||| | | || | ||| ||||||    
T  16404097 tatgatagcttttgccattcttttgagactgaaatcttcagaaacaatcacccaaattcttaattcaaagtggttgactaccctctcgttattaaagacg 16404196  T
Q  124 agttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagcatcaccaaccaaaaagtctacaa 223  Q
    ||||| ||||||||||||||||| ||||| ||||| || || ||||||||||| |||||||||||   |||  | |||||||||||||||||||| || |    
T  16404197 agttgggcaagtgttgttttacccagtccccctaggcctactattggatagacagataagtcctccaattcatatgcatcaccaaccaaaaagtccacga 16404296  T
Q  224 ttttatcctt 233  Q
    ||||||||||    
T  16404297 ttttatcctt 16404306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 15358097 - 15358314
Alignment:
Q  20 cttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaa 119  Q
    ||||||||||| ||||||||||||| || | | |||||||||||||||| || ||||||||| ||| ||||||||| ||||||| ||| |||||||||||    
T  15358097 cttctatgatgccttttgtcattctcttcaaactgaaatcttctgaaacacatacccaaattcttagctcaaagtgtttgactaccttctcatgattgaa 15358196  T
Q  120 gacgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagcatcaccaaccaaaaagtct 219  Q
     || | ||| |||||||||||||| || |||||||| || || || | ||||||||| ||||| |||||        | |||||| ||||||||||||||    
T  15358197 cacaacttgggcaagtgttgttttcccaagtccaccaagacctactactggatagactgataaatcctcacaagtatacgcatcatcaaccaaaaagtct 15358296  T
Q  220 acaattttatccttatct 237  Q
    ||||||| ||||||||||    
T  15358297 acaatttgatccttatct 15358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 16414821 - 16415029
Alignment:
Q  21 ttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaag 120  Q
    |||||||||||||||||||||||| || | | | |||||||||||||| || ||||||||| ||| ||||||||||||||||| | | |||||||| |||    
T  16414821 ttctatgatggcttttgtcattctcttcaaactaaaatcttctgaaacacatacccaaattcttagctcaaagtggttgactaccctttcatgattaaag 16414920  T
Q  121 acgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagcatcaccaaccaaaaagtcta 220  Q
    |  |||||  |||||| ||||||||| |  |||||||| || |||||||||||||| | ||| ||  ||    | |||||||||||||||||||| || |    
T  16414921 atcagttggacaagtgctgttttacccaaaccacctagacctacaattggatagactggtaaatctactaaaacagaagcatcaccaaccaaaaattcca 16415020  T
Q  221 caattttat 229  Q
    |||||||||    
T  16415021 caattttat 16415029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 15452686 - 15452503
Alignment:
Q  53 tgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaagacgagttgagcaagtgttgttttacctagtcc 152  Q
    |||| ||||| |||||  ||||||||||| ||| ||||||||||||||||||  | ||||||||||| |  ||||  || |||  |||||||||||||||    
T  15452686 tgaactcttcggaaacatacacccaaattcttagctcaaagtggttgactatactctcatgattgaaaattagtttggcgagtactgttttacctagtcc 15452587  T
Q  153 acctagcccaacaattggatagacggataagtcctcttgttcggaagcatcaccaaccaaaaagtctacaattttatccttatc 236  Q
    ||| || || || |||||||| || ||||||| |||| |||  |  |||||||||| |||||||||||||||||||||||||||    
T  15452586 accgagacctactattggataaactgataagttctctagttttgctgcatcaccaatcaaaaagtctacaattttatccttatc 15452503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 237
Target Start/End: Complemental strand, 15428842 - 15428660
Alignment:
Q  55 aaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaagacgagttgagcaagtgttgttttacctagtccac 154  Q
    |||||||||||||| || ||||||||| |   ||||||||| ||||| | | | || ||||||||||  ||||| |||||||||||||| || |||||||    
T  15428842 aaatcttctgaaacacaaacccaaattctcggctcaaagtgtttgaccaccctctcgtgattgaagataagttgggcaagtgttgtttttccaagtccac 15428743  T
Q  155 ctagcccaacaattggatagacggataagtcctcttgttcggaagcatcaccaaccaaaaagtctacaattttatccttatct 237  Q
    |||  |||||||||||||| ||  | || |||||  |  | ||||| |||||||||||||| ||||||||||||||| |||||    
T  15428742 ctataccaacaattggataaacacacaaatcctcaagaccagaagcttcaccaaccaaaaaatctacaattttatccatatct 15428660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 15336456 - 15336623
Alignment:
Q  21 ttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaag 120  Q
    ||||||||||||||||||||||||||| | | |||||||||||||||| || ||||||||| |||  ||||| ||||||||||   | ||||||||||||    
T  15336456 ttctatgatggcttttgtcattcttttcaaactgaaatcttctgaaacacatacccaaattcttagatcaaactggttgactacactctcatgattgaag 15336555  T
Q  121 acgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctc 188  Q
    |  ||||| |  | ||||||||| || | |||||| |  || ||||||||||| || ||||| |||||    
T  15336556 ataagttgggtcaatgttgtttttccaattccaccaacaccgacaattggataaacagataaatcctc 15336623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 15083760 - 15083988
Alignment:
Q  7 ttcttagttgccccttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatct 106  Q
    ||||||||| || |||| ||||| ||||| |||||||  || | | | |||||||||||||| |||||||| ||| |  |||||  ||| | ||| | |     
T  15083760 ttcttagtttccgcttcgatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactca--gtgttggaccaccc 15083857  T
Q  107 tgtcatgattgaagacgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgttcggaagcatcacc 206  Q
    | |||||||||||||  ||||| |||||||||||||| || ||||| ||||| || ||||||||| ||||  | || |||||  |  | ||||| || |     
T  15083858 tttcatgattgaagataagttgggcaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagaccagaagcttccct 15083957  T
Q  207 aaccaaaaagtctacaattttatccttatct 237  Q
    ||||||||| |||||||||||||||||||||    
T  15083958 aaccaaaaaatctacaattttatccttatct 15083988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 17928427 - 17928509
Alignment:
Q  23 ctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatc 105  Q
    |||||||  ||||||||||||| || ||| ||||||||||||||||  ||||||||||| ||| || ||||||||| ||||||    
T  17928427 ctatgataacttttgtcattctcttcagactgaaatcttctgaaacagacacccaaattcttagctaaaagtggttaactatc 17928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 15331991 - 15332157
Alignment:
Q  7 ttcttagttgccccttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatct 106  Q
    |||||||||||  |||| ||||||  | | ||||||||||| | | | ||||| |||||||| |||||||| ||| | |  |||||||| ||||| |       
T  15331991 ttcttagttgcagcttcaatgatgcttctagtcattcttttgatactaaaatcatctgaaacacacacccacattctcagatcaaagtgtttgacaacac 15332090  T
Q  107 tgtcatgattgaagacgagttgagcaagtgttgttttacctagtccacctagcccaacaattggata 173  Q
    | ||||||||||| |  ||||| |||||||||||||| || ||||| ||||| || |||||||||||    
T  15332091 tttcatgattgaatataagttgggcaagtgttgtttttccaagtccgcctagtcccacaattggata 15332157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 30476399 - 30476454
Alignment:
Q  126 ttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggata 181  Q
    ||||||||||||||||||||| |  |||||||| |||||||| ||||||| |||||    
T  30476399 ttgagcaagtgttgttttaccaacaccacctaggccaacaataggatagatggata 30476454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 8187929 - 8188090
Alignment:
Q  21 ttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaagtggttgactatcttgtcatgattgaag 120  Q
    ||||||||||| | || ||||||| || | | |||||||||| ||||| || ||||||||| ||| ||||||||||| ||||||||| ||||||||||||    
T  8187929 ttctatgatggatcttatcattctcttcaaactgaaatcttcagaaacacatacccaaattcttagctcaaagtggtcgactatcttctcatgattgaag 8188028  T
Q  121 acgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataa 182  Q
    | |||||| |  ||||||||||| || ||||||||||| ||||| ||||||||||| |||||    
T  8188029 atgagttgggtcagtgttgtttttccaagtccacctagaccaactattggatagacagataa 8188090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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