View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_79 (Length: 247)
Name: NF10579_low_79
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_79 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 42813004 - 42813232
Alignment:
| Q |
15 |
gacatcagtgaggaagggagaaaggatttcaagtggttctgtaacagccaactaactaccttcttcgtgcttatatgaataactcattataaggctggcc |
114 |
Q |
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| T |
42813004 |
gacattagtgaggaagggagaaaggatttcaagtggttctgtaacagccaact----accttcttcgtgcttatatgaataactcattataaggctggcc |
42813099 |
T |
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| Q |
115 |
ccattatggtttagtctctctgacaaacctagccaatatgtgccaatttttaagtgttcagattctattcaacacaacacttgttcgtgacctcgtcttc |
214 |
Q |
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| T |
42813100 |
ccattatggtttagtctctctgacaaacctagccaatatgtgccaatttttaagtgttcagattctattcaacacaacacttgttcatgacctcgtcttc |
42813199 |
T |
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| Q |
215 |
ttatttattcttctctagtcaaatcacaatagc |
247 |
Q |
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| T |
42813200 |
ttatttattcttctctagtcaaatcacaatagc |
42813232 |
T |
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