View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_8 (Length: 425)

Name: NF10579_low_8
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_8
NF10579_low_8
[»] chr8 (5 HSPs)
chr8 (9-300)||(8871877-8872177)
chr8 (30-122)||(9604993-9605085)
chr8 (9-123)||(10260412-10260526)
chr8 (11-123)||(17834401-17834513)
chr8 (9-49)||(4424681-4424721)
[»] chr5 (4 HSPs)
chr5 (12-120)||(20174547-20174655)
chr5 (30-100)||(32295900-32295970)
chr5 (30-120)||(17237480-17237570)
chr5 (1-42)||(25585958-25585999)
[»] chr7 (9 HSPs)
chr7 (10-123)||(13596901-13597014)
chr7 (10-120)||(23040077-23040188)
chr7 (10-121)||(26754863-26754974)
chr7 (10-116)||(22911163-22911269)
chr7 (30-123)||(48859425-48859518)
chr7 (11-123)||(23586177-23586289)
chr7 (16-123)||(15026342-15026449)
chr7 (9-58)||(28544168-28544217)
chr7 (32-100)||(26036852-26036920)
[»] chr3 (7 HSPs)
chr3 (10-123)||(52585648-52585761)
chr3 (10-95)||(53581297-53581382)
chr3 (11-121)||(39453082-39453192)
chr3 (33-121)||(8726867-8726955)
chr3 (33-121)||(9078754-9078842)
chr3 (11-100)||(20685411-20685506)
chr3 (30-95)||(4136400-4136467)
[»] chr6 (2 HSPs)
chr6 (9-123)||(15610092-15610206)
chr6 (10-122)||(5827557-5827669)
[»] scaffold0913 (1 HSPs)
scaffold0913 (11-123)||(3526-3638)
[»] scaffold0898 (1 HSPs)
scaffold0898 (11-123)||(1963-2075)
[»] chr4 (4 HSPs)
chr4 (32-120)||(48026142-48026230)
chr4 (30-83)||(18570372-18570425)
chr4 (30-100)||(39774864-39774936)
chr4 (1-44)||(13501561-13501604)
[»] chr2 (6 HSPs)
chr2 (11-123)||(33170921-33171032)
chr2 (10-120)||(5849119-5849229)
chr2 (11-123)||(15745580-15745692)
chr2 (10-123)||(18579540-18579653)
chr2 (32-122)||(36098784-36098874)
chr2 (30-123)||(19051558-19051651)
[»] chr1 (5 HSPs)
chr1 (10-123)||(42132020-42132133)
chr1 (30-123)||(44022171-44022264)
chr1 (29-93)||(32924064-32924128)
chr1 (30-94)||(43896451-43896515)
chr1 (53-123)||(30939668-30939738)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 8871877 - 8872177
Alignment:
Q  9 acctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataa 108  Q
    ||||||||||||||| |||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||      
T  8871877 acctcatttgcttgtatcctcacaaactcaacactaaagttaacataatattgttcaaaaataattttataattatgaataatcatcccaaaatctat-- 8871974  T
Q  109 tatcctgatgtgcaggtaaataaataattcaaaaatttaaatgatccgactaaattattttagttaaannnnnnnatttatgtgtatggccgaat----- 203  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||         
T  8871975 tatcctaatgtgcatgtaaataaataattcaataatttaaatgatccgactaaattattttagttaaatttttttatttatgtgtatggccgaatatatt 8872074  T
Q  204 ------acatgttgtgaccaaataaaacttgcaacaataatcatagttcctctttcaaatagtgtgttcnnnnnnnnnnnggtcaatatcaaatagtgtg 297  Q
          | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  8872075 tttatcagatgttgtgaccaaataaaacttgcaacaataatcatagttcctctttcaaatagtgtgttctttttttttttggtcaatatcaaatagtgtg 8872174  T
Q  298 ttc 300  Q
    |||    
T  8872175 ttc 8872177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 9604993 - 9605085
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgca 122  Q
    ||||||||||||||| |||||| ||||||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||| ||| |||||||||    
T  9604993 acaaactcaacactagagttgatataatattgtttaaagataattttacaattatgaataatcatcacaaactctataacatcttgatgtgca 9605085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 10260526 - 10260412
Alignment:
Q  9 acctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataa 108  Q
    ||||||||||||||| ||   | ||||||||||||| |||||||||| ||||||||||| ||| ||||| ||||||||||||||||| |||| | | |||    
T  10260526 acctcatttgcttgtctcttcagaaactcaacactagagttgacatagtattgttcaaagatagttttacaattatgaataatcatcccaaattatgtaa 10260427  T
Q  109 tatcctgatgtgcag 123  Q
     ||| ||||||||||    
T  10260426 catcatgatgtgcag 10260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 17834401 - 17834513
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    |||||||| |||| |||  ||||||||||||||| |||||||||| |||| |||||| |||  | || ||||||||||||||||| |||| ||| ||| |    
T  17834401 ctcatttgtttgtctcctcacaaactcaacactagagttgacatagtattattcaaagatagctatacaattatgaataatcatcccaaattctgtaaca 17834500  T
Q  111 tcctgatgtgcag 123  Q
    |||||||||||||    
T  17834501 tcctgatgtgcag 17834513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 4424681 - 4424721
Alignment:
Q  9 acctcatttgcttgtgtccctacaaactcaacactaaagtt 49  Q
    ||||||||||||||| ||| |||||||||||||||| ||||    
T  4424681 acctcatttgcttgtctccgtacaaactcaacactagagtt 4424721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 20174655 - 20174547
Alignment:
Q  12 tcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatat 111  Q
    |||||||||||| |||  ||||||||||||||| | |||||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||| ||    
T  20174655 tcatttgcttgtctcctcacaaactcaacactagaattgacataatattgttcaaagatagttttacaattatgaataatcatctcaaactctataacat 20174556  T
Q  112 cctgatgtg 120  Q
    | |||||||    
T  20174555 cttgatgtg 20174547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 32295900 - 32295970
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaa 100  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| ||||| ||||||| ||||||||| ||||    
T  32295900 acaaactcaacactagagttgacatgatattgttcaaagatagttttacaattatggataatcatcccaaa 32295970  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 17237480 - 17237570
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtg 120  Q
    ||||||||||||||| |||||||||| ||||||| ||| ||| ||||| | ||||||||||||||| |||  ||| ||| ||| |||||||    
T  17237480 acaaactcaacactagagttgacatagtattgtttaaagatagttttacagttatgaataatcatcccaatttctgtaacatcatgatgtg 17237570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25585958 - 25585999
Alignment:
Q  1 tatggaccacctcatttgcttgtgtccctacaaactcaacac 42  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  25585958 tatggacaacctcatttgcttgtctccgtacaaactcaacac 25585999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 13597014 - 13596901
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    |||||||||||||| |||  ||||||||||||||| |||||||||| ||||||||||| ||| ||||| |||||||||| |||||| |||| ||| |||     
T  13597014 cctcatttgcttgtctcctcacaaactcaacactagagttgacatagtattgttcaaagatagttttacaattatgaattatcatcccaaattctgtaaa 13596915  T
Q  110 atcctgatgtgcag 123  Q
    ||||||||||||||    
T  13596914 atcctgatgtgcag 13596901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 23040077 - 23040188
Alignment:
Q  10 cctcatttgcttg-tgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataa 108  Q
    ||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||| ||| |||    
T  23040077 cctcatttgcttggtctccttacaaactcaacactagagttgacataatattgttcaaagatagttttacaattatggataatcatcgcaaattctgtaa 23040176  T
Q  109 tatcctgatgtg 120  Q
     |||||||||||    
T  23040177 catcctgatgtg 23040188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 26754974 - 26754863
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    |||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||| | | |||     
T  26754974 cctcatttgcttgtctcctcacaaactcaacactatagttgacataatattgttcaaagatagttttacaattatggataatcatcccaaattatgtaac 26754875  T
Q  110 atcctgatgtgc 121  Q
    ||||||||||||    
T  26754874 atcctgatgtgc 26754863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 22911269 - 22911163
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||| ||| |||     
T  22911269 cctcatttgcttgtctccttacaaactcaaaactagagttgacataatattgttcaaagatagttttacaattatggataatcatcccaaattctgtaac 22911170  T
Q  110 atcctga 116  Q
    |||||||    
T  22911169 atcctga 22911163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 48859518 - 48859425
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgcag 123  Q
    ||||||||||||||| |||||| ||||||||||||| | ||| ||||| ||||||||||||||||| |||| |||  || ||||||||||||||    
T  48859518 acaaactcaacactagagttgatataatattgttcatagatagttttacaattatgaataatcatcccaaattctgcaacatcctgatgtgcag 48859425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 23586289 - 23586177
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    |||||||| |||| |||  ||||||| |||| ||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||| | | ||| |    
T  23586289 ctcatttgtttgtctcctcacaaactgaacattaaggttgacataatattgttcaaagatagttttacaattatgaataatcatcccaaactttgtaaca 23586190  T
Q  111 tcctgatgtgcag 123  Q
    || ||||||||||    
T  23586189 tcttgatgtgcag 23586177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 15026449 - 15026342
Alignment:
Q  16 ttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctg 115  Q
    |||||||| ||| |||||| ||| ||||| |||||||||||||||||||||| ||| ||| | || |||| ||||||||| |||| | | ||| ||||||    
T  15026449 ttgcttgtctccttacaaagtcagcactagagttgacataatattgttcaaagatagtttaacaaatatggataatcatcccaaattatgtaacatcctg 15026350  T
Q  116 atgtgcag 123  Q
    | ||||||    
T  15026349 acgtgcag 15026342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 28544217 - 28544168
Alignment:
Q  9 acctcatttgcttgtgtccctacaaactcaacactaaagttgacataata 58  Q
    ||||||||||||||| | | |||||||||||||||| |||| ||||||||    
T  28544217 acctcatttgcttgtcttcgtacaaactcaacactagagtttacataata 28544168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 26036852 - 26036920
Alignment:
Q  32 aaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaa 100  Q
    |||||||||||| ||||| |||||||||||||  |||||| || || | ||||| ||||||||| ||||    
T  26036852 aaactcaacactgaagttaacataatattgtttgaaaatagttctacacttatggataatcatcccaaa 26036920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 52585648 - 52585761
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    |||||||||||||| ||   || |||||||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||| ||| |||     
T  52585648 cctcatttgcttgtctcatcacgaactcaacactagagttgacataatattgttcaaagatagttttacaattataaataatcatctcaaattctgtaac 52585747  T
Q  110 atcctgatgtgcag 123  Q
    ||||||||||||||    
T  52585748 atcctgatgtgcag 52585761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 53581382 - 53581297
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatc 95  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||| ||| ||||| ||||||| |||||||||    
T  53581382 cctcatttgcttgtctccttacaaactcaaaactagagttgacataatattgttcaaagatagttttacaattatggataatcatc 53581297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 39453082 - 39453192
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    |||||||| |||| |||  ||||| || ||| || |||||||||||||||||||||| ||| ||||| ||||||| || |||||| |||| | | |||||    
T  39453082 ctcatttgtttgtctcctcacaaagtccacattagagttgacataatattgttcaaagatagttttacaattatggatcatcatcccaaattttgtaata 39453181  T
Q  111 tcctgatgtgc 121  Q
    || ||||||||    
T  39453182 tcttgatgtgc 39453192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 8726955 - 8726867
Alignment:
Q  33 aactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgc 121  Q
    |||||||| | | ||||||||| ||| |||||||| ||||||||| | ||||||||||||||| |||| ||| ||| ||||| ||||||    
T  8726955 aactcaactcaagagttgacatgatactgttcaaagataattttacacttatgaataatcatcacaaactctgtaacatcctaatgtgc 8726867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 9078842 - 9078754
Alignment:
Q  33 aactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgc 121  Q
    |||||||| | | ||||||||| ||| |||||||| ||||||||| | ||||||||||||||| |||| ||| ||| ||||| ||||||    
T  9078842 aactcaactcaagagttgacatgatactgttcaaagataattttacacttatgaataatcatcacaaactctgtaacatcctaatgtgc 9078754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 20685506 - 20685411
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacat------aatattgttcaaaaataattttataattatgaataatcatctcaaa 100  Q
    ||||||||||||| |||  ||||||||||||||| |||||||||      ||||||||||||| ||| ||||  ||||||| ||||||||| ||||    
T  20685506 ctcatttgcttgtctcctcacaaactcaacactagagttgacataataataatattgttcaaagatagttttgcaattatggataatcatcccaaa 20685411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 4136467 - 4136400
Alignment:
Q  30 acaaactcaacactaaag--ttgacataatattgttcaaaaataattttataattatgaataatcatc 95  Q
    ||||||||||||||| ||  |||||||||||||||||||   || ||||| || ||||||||||||||    
T  4136467 acaaactcaacactagagagttgacataatattgttcaatggtagttttacaaatatgaataatcatc 4136400  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 15610206 - 15610092
Alignment:
Q  9 acctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataa 108  Q
    |||||||||| |||| |||  ||||||||||||||| |||||||||| ||||||||||| ||| ||||| ||||||| ||||||||| |||| ||| |||    
T  15610206 acctcatttgtttgtctcctcacaaactcaacactagagttgacatagtattgttcaaagatagttttacaattatggataatcatcccaaattctgtaa 15610107  T
Q  109 tatcctgatgtgcag 123  Q
     ||||||||||||||    
T  15610106 catcctgatgtgcag 15610092  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 5827669 - 5827557
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||| ||| ||||| ||||||| ||||||||| |||| | | |||     
T  5827669 cctcatttgcttgtctccttacaaactcaacactagagttgatataatattgttcaaagatagttttacaattatggataatcatcccaaattttgtaac 5827570  T
Q  110 atcctgatgtgca 122  Q
    ||||||| |||||    
T  5827569 atcctgacgtgca 5827557  T

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Target: scaffold0913 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 3638 - 3526
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    ||||||||||||| |||  ||||| ||||||||| |||| ||||||||| ||||||| ||||||||| ||||||||||||| ||| |||| ||| ||| |    
T  3638 ctcatttgcttgtctcctcacaaattcaacactagagttcacataatatcgttcaaagataattttacaattatgaataattatcccaaactctgtaaca 3539  T
Q  111 tcctgatgtgcag 123  Q
    |||||||||||||    
T  3538 tcctgatgtgcag 3526  T

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Target: scaffold0898 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 1963 - 2075
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    ||||||||||||| |||  ||||| ||||||||| |||| ||||||||| ||||||| ||||||||| ||||||||||||| ||| |||| ||| ||| |    
T  1963 ctcatttgcttgtctcctcacaaattcaacactagagttcacataatatcgttcaaagataattttacaattatgaataattatcccaaactctgtaaca 2062  T
Q  111 tcctgatgtgcag 123  Q
    |||||||||||||    
T  2063 tcctgatgtgcag 2075  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 48026142 - 48026230
Alignment:
Q  32 aaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtg 120  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||| | ||| |||||||||||    
T  48026142 aaactcaacactagagttgacataatattgttcaaagatagttttacaattatgaataatcatcccaaaatttgtaacatcctgatgtg 48026230  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 18570372 - 18570425
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataatta 83  Q
    ||||||||||||||| |||||| ||||||||||||||| ||| ||||| |||||    
T  18570372 acaaactcaacactagagttgatataatattgttcaaagatatttttacaatta 18570425  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 39774936 - 39774864
Alignment:
Q  30 acaaactcaacactaaagttgacataa-tattgttcaaaaata-attttataattatgaataatcatctcaaa 100  Q
    ||||||||||||||||||||||||||| || | ||||||||||  |||||  |||||||||||||||| ||||    
T  39774936 acaaactcaacactaaagttgacataattaatattcaaaaatagtttttacgattatgaataatcatcccaaa 39774864  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13501604 - 13501561
Alignment:
Q  1 tatggaccacctcatttgcttgtgtccctacaaactcaacacta 44  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  13501604 tatggacaacctcatttgcttgtctccgtacaaactcaacacta 13501561  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 33170921 - 33171032
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    ||||||||||||| |||  |  ||||||| |||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||| ||| |    
T  33170921 ctcatttgcttgtctcctcaagaactcaaaactagagttgacataatattgttcaaagatagttttacaattatgaataatcatc-caaactctgtaaca 33171019  T
Q  111 tcctgatgtgcag 123  Q
    |||||||||||||    
T  33171020 tcctgatgtgcag 33171032  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 5849229 - 5849119
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    ||||||||| |||| |||  ||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||| |||||||||| || | | | |||     
T  5849229 cctcatttgtttgtctcctcacaaactcaacactagagttgacataacattgttcaaagatagttttataattataaataatcatcccacattatgtaac 5849130  T
Q  110 atcctgatgtg 120  Q
    |||||||||||    
T  5849129 atcctgatgtg 5849119  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 15745580 - 15745692
Alignment:
Q  11 ctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataata 110  Q
    ||||||||||||| ||| |||||| ||||||  | |||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||| ||| ||| |    
T  15745580 ctcatttgcttgtctccttacaaattcaacataagagttgacataatattgttcaaatatagttttacaattatggataatcatcccaaattctgtaaca 15745679  T
Q  111 tcctgatgtgcag 123  Q
    |||| | ||||||    
T  15745680 tcctaacgtgcag 15745692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 18579540 - 18579653
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||  || |||||| |||| ||| |||     
T  18579540 cctcatttgtttgtctcctcacaaactcaacactaaagttgacataatattgttctaagatagttttacaattatagattatcatcccaaattctgtaac 18579639  T
Q  110 atcctgatgtgcag 123  Q
    | ||||| ||||||    
T  18579640 aacctgacgtgcag 18579653  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 36098874 - 36098784
Alignment:
Q  32 aaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgca 122  Q
    ||||||||||||  |||| ||||||||||||||||||||| ||||  ||| ||||||||| ||   | | ||||||| |||||||||||||    
T  36098874 aaactcaacactttagttaacataatattgttcaaaaatagttttccaatcatgaataataatgcaatactctataacatcctgatgtgca 36098784  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 19051651 - 19051558
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgcag 123  Q
    |||||||||||| || ||||| | |||||||||||||| ||| ||||| | ||||||||||||||| | || | | ||| || |||||||||||    
T  19051651 acaaactcaacattatagttgtcgtaatattgttcaaatatagttttacacttatgaataatcatcccgaactatgtaacattctgatgtgcag 19051558  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 42132133 - 42132020
Alignment:
Q  10 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataat 109  Q
    ||||||||| |||| |||  ||||||||||||||| |||||| ||||||||||||||| ||| |||||  |||||| ||||||||| |||| | | |||     
T  42132133 cctcatttgtttgtctcctcacaaactcaacactagagttgatataatattgttcaaagatagttttacgattatggataatcatcccaaattatgtaac 42132034  T
Q  110 atcctgatgtgcag 123  Q
    ||||||||||||||    
T  42132033 atcctgatgtgcag 42132020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 44022264 - 44022171
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgcag 123  Q
    ||||||||||||||| |||||||||| ||||||||||| ||| ||||  ||||||| ||||||||| |||| | | ||| ||||| ||||||||    
T  44022264 acaaactcaacactagagttgacatagtattgttcaaagatagttttgcaattatggataatcatcccaaattatgtaacatcctaatgtgcag 44022171  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 32924128 - 32924064
Alignment:
Q  29 tacaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatca 93  Q
    |||||||||||||||| ||||||||| |||||||||||| ||| ||||| ||||| | |||||||    
T  32924128 tacaaactcaacactagagttgacatgatattgttcaaagatagttttacaattaaggataatca 32924064  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 43896515 - 43896451
Alignment:
Q  30 acaaactcaacactaaagttgacataatattgttcaaaaataattttataattatgaataatcat 94  Q
    |||||||||| ||  ||||||| ||||||||||||||| ||| ||||| ||||||||||||||||    
T  43896515 acaaactcaatacggaagttgatataatattgttcaaagatagttttacaattatgaataatcat 43896451  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 30939668 - 30939738
Alignment:
Q  53 ataatattgttcaaaaataattttataattatgaataatcatctcaaaatctataatatcctgatgtgcag 123  Q
    ||||||||| ||||| ||| ||||| ||||||||||||||||| |||| | | ||| ||| ||||||||||    
T  30939668 ataatattgatcaaagatagttttaaaattatgaataatcatcccaaattttgtaacatcttgatgtgcag 30939738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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