View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_81 (Length: 243)

Name: NF10579_low_81
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_81
NF10579_low_81
[»] chr4 (5 HSPs)
chr4 (10-229)||(48965442-48965661)
chr4 (17-201)||(48958264-48958451)
chr4 (17-170)||(48961413-48961569)
chr4 (13-227)||(48912191-48912408)
chr4 (53-189)||(48974265-48974401)
[»] scaffold0536 (1 HSPs)
scaffold0536 (17-202)||(6382-6570)
[»] chr2 (3 HSPs)
chr2 (13-201)||(13448479-13448667)
chr2 (17-201)||(13440320-13440504)
chr2 (17-123)||(13454954-13455060)
[»] chr7 (1 HSPs)
chr7 (12-201)||(3417402-3417591)
[»] chr5 (2 HSPs)
chr5 (10-201)||(28385447-28385638)
chr5 (13-123)||(12540801-12540911)
[»] chr6 (2 HSPs)
chr6 (17-201)||(12590041-12590231)
chr6 (55-201)||(12483336-12483482)
[»] chr8 (1 HSPs)
chr8 (59-201)||(12641353-12641495)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 48965442 - 48965661
Alignment:
Q  10 cagaacctgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactc 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactc 48965541  T
Q  110 tcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965542 tcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataac 48965641  T
Q  210 gacagaggcttccaaagctt 229  Q
    ||||||||||||||||||||    
T  48965642 gacagaggcttccaaagctt 48965661  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 48958264 - 48958451
Alignment:
Q  17 tgtggagcccaacccctaataatcaaacc---cttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcat 113  Q
    ||||| ||||| |||||||| ||||||||   |||||||||||||||||||||||||||||  || || |||||||||   ||||||||||||||||| |    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgt 48958363  T
Q  114 cctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    | |||||||| || ||    |||| |||||||| ||| || ||||| |||||||||||  ||||||||||||||||||| ||||||||    
T  48958364 cttctttccctttcttctcaggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatc 48958451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 48961413 - 48961569
Alignment:
Q  17 tgtggagcccaacccctaataatcaaacccttctt---tccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcat 113  Q
    ||||| ||||| ||| |||| ||||||||||||||   | |||||||||||||||| ||||  || || |||||||| |  ||||||||||| |||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcat 48961512  T
Q  114 cctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttcta 170  Q
    || ||||||| || ||    |||| |||||||| ||| || ||||||||||||||||    
T  48961513 ccactttcccttttttctcaggaacaacccatacaaattcgtgacccgatgcttcta 48961569  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 48912408 - 48912191
Alignment:
Q  13 aacctgtggagcccaacccctaataatcaaacc---cttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactc 109  Q
    ||||||||||||||||||| ||||||||| | |   ||||||||| ||  |||||||||| || | |||||| ||||| ||||  |||||||||||| |     
T  48912408 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 48912309  T
Q  110 tcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataac 209  Q
    |||| |||  |||  || ||    |||| ||||||||| || || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  | ||     
T  48912308 tcattctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 48912209  T
Q  210 gacagaggcttccaaagc 227  Q
    ||||  ||||||||||||    
T  48912208 gacattggcttccaaagc 48912191  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 48974265 - 48974401
Alignment:
Q  53 ccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaat 152  Q
    ||||| || |||||||| |||| |||||| | ||||||||  ||||| || |  ||||||||||||||||| || ||   ||| | ||||||||| || |    
T  48974265 ccaatattcctctcttcaaatccctttggcatccacttttcgttctcgtcattgctctcatcctctttccctttcttctcggggacaacccatatgaatt 48974364  T
Q  153 catgacccgatgcttctattgcacacgcaatctcata 189  Q
      |||||||||||||||||||| |  |||||||||||    
T  48974365 ggtgacccgatgcttctattgcgcttgcaatctcata 48974401  T

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Target: scaffold0536 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 6570 - 6382
Alignment:
Q  17 tgtggagcccaacccctaataatcaaacccttctt---tccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcat 113  Q
    |||||||||||||||||||||||||||||||||||   ||| || |||||||||||||||| |||||| ||||| |||   |||||||||||||||||||    
T  6570 tgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcat 6471  T
Q  114 cctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcc 202  Q
    | |||||||| || ||    |||| ||||||||| || |  |||||||||||||||||  |||| |||||||| ||||| |||||||||    
T  6470 cttctttccctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatcc 6382  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 13448479 - 13448667
Alignment:
Q  13 aacctgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctca 112  Q
    ||||||||| |||||||||||||| |||||||||||||| || || ||||||||||| |||| ||| |||||||||||||  ||||| ||||| ||||||    
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctca 13448578  T
Q  113 tcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    || |||||||| || ||    |||| ||||||||| ||    ||||| ||||||||||| ||||| || ||||| || || ||||||||    
T  13448579 tcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatc 13448667  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 13440320 - 13440504
Alignment:
Q  17 tgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcct 116  Q
    ||||| ||||||||| |||| ||||||||| || | | |||||||||||||||||||| |||||| ||||||||||  ||||| || ||||||||||| |    
T  13440320 tgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatctt 13440419  T
Q  117 ctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    ||||||| || ||    |||| ||||||||| ||    ||||  |||||||||||||| ||||| |||||||| || ||||||||    
T  13440420 ctttccctttcttctcaggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatc 13440504  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 13454954 - 13455060
Alignment:
Q  17 tgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcct 116  Q
    ||||| |||||||||||||| ||||||||||| ||  | |||||| ||||||| |||| ||| || ||||||||||| ||||||||||| |||||||| |    
T  13454954 tgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatctt 13455053  T
Q  117 ctttccc 123  Q
    |||||||    
T  13455054 ctttccc 13455060  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 3417591 - 3417402
Alignment:
Q  12 gaacctgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctc 111  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||||||||| || |||| ||| || ||||||||||  ||||| |||||  ||||    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctc 3417492  T
Q  112 atcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    ||| ||||| || || ||     ||| ||||||||| ||    ||||||||||||||||||||  | ||||||||||| || ||||||||    
T  3417491 atcttcttttcctttcttctcaagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatc 3417402  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 28385447 - 28385638
Alignment:
Q  10 cagaacctgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactc 109  Q
    |||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| || |||| |||||| | ||||||||  ||||| |||||  ||    
T  28385447 cagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatc 28385546  T
Q  110 tcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    ||||| |||||||| || ||    |||| ||||||||| ||    ||||| |||||||||| ||| || ||||||||||| || ||||||||    
T  28385547 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatc 28385638  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 12540801 - 12540911
Alignment:
Q  13 aacctgtggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctca 112  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |||| ||| || | ||||||||  ||||| |||||| |||||    
T  12540801 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctca 12540900  T
Q  113 tcctctttccc 123  Q
    || ||||||||    
T  12540901 tcttctttccc 12540911  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12590231 - 12590041
Alignment:
Q  17 tgtggagcccaacccctaataatcaaacccttcttt------ccaatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactct 110  Q
    ||||| |||||||||||||| ||||||||||||||       ||||||||||||||||| ||||   | || ||||| ||||| || ||||| |||||||    
T  12590231 tgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactct 12590132  T
Q  111 catcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    |||| || ||||| || ||   ||||||||||||||  || || || || |||||||||||  |||||| |||||||||||| ||||||||    
T  12590131 catcttccttcccttttttctcgggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatc 12590041  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 12483482 - 12483336
Alignment:
Q  55 aatgtttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatca 154  Q
    |||||||||||| || |||| ||| || ||||||||||  |||||||| || |||||||| || ||||| || ||    |||| ||||||||| || |      
T  12483482 aatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaatttt 12483383  T
Q  155 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    | |||||||||||||||| | || | ||| || ||||||||||||||    
T  12483382 ttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatc 12483336  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 12641495 - 12641353
Alignment:
Q  59 tttctctcttcgaatctctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccatataaaatcatgac 158  Q
    ||||||||||||||||  || || ||||||||||  |||||||||||||||||||| | |||||| || ||    |||| |||||||| ||| || ||||    
T  12641495 tttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgac 12641396  T
Q  159 ccgatgcttctattgcacacgcaatctcataaagctgtttatc 201  Q
    | ||   ||||||| | | ||||||||| ||||| ||||||||    
T  12641395 ctgaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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