View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_82 (Length: 243)

Name: NF10579_low_82
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_82
NF10579_low_82
[»] scaffold0654 (2 HSPs)
scaffold0654 (11-243)||(6480-6712)
scaffold0654 (11-54)||(5126-5169)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-243)||(116399-116631)
[»] chr5 (4 HSPs)
chr5 (183-235)||(37588375-37588427)
chr5 (183-235)||(37690651-37690704)
chr5 (183-235)||(37526214-37526266)
chr5 (183-235)||(15074764-15074816)
[»] chr3 (3 HSPs)
chr3 (183-235)||(14548736-14548788)
chr3 (184-234)||(26542541-26542591)
chr3 (184-224)||(13371131-13371171)
[»] chr6 (2 HSPs)
chr6 (184-232)||(2460167-2460214)
chr6 (184-224)||(20512660-20512700)
[»] chr4 (2 HSPs)
chr4 (184-232)||(27123368-27123415)
chr4 (181-210)||(11264329-11264358)
[»] chr7 (2 HSPs)
chr7 (181-231)||(12792706-12792756)
chr7 (175-224)||(28165105-28165155)
[»] chr2 (4 HSPs)
chr2 (181-231)||(43205316-43205366)
chr2 (184-229)||(37034031-37034076)
chr2 (183-231)||(1939347-1939395)
chr2 (184-236)||(43065466-43065518)
[»] chr8 (2 HSPs)
chr8 (183-224)||(11795106-11795147)
chr8 (183-231)||(12361199-12361247)
[»] chr1 (2 HSPs)
chr1 (186-235)||(15515544-15515593)
chr1 (183-240)||(35179137-35179194)
[»] scaffold0089 (1 HSPs)
scaffold0089 (184-224)||(33643-33683)


Alignment Details
Target: scaffold0654 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 6480 - 6712
Alignment:
Q  11 gacatcataaccacactaccaagcacggtatcaaaatcacgtatgtctagtatttcatgctaggcttggtattagctatcagaaaagttttgcacctcaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6480 gacagcataaccacactaccaagcacggtatcaaaatcacgtatatctagtatttcatgctaggcttggtattagctatcagaaaagttttgcacctcaa 6579  T
Q  111 ttaagaaagctatcaaatgcttccaaattaaggaataactaatttctataaaatatccaattaggttcataactgttttcaacttatttccataagctct 210  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6580 ttaagaaagctatcaaatgcttcaaaattaaagaataacttatttctataaaatatccaattaggttcataactgttttcaacttatttccataagctct 6679  T
Q  211 gcataataacttatcaaaacaacttttaacctc 243  Q
    |||||||||||||||||||||||||||||||||    
T  6680 gcataataacttatcaaaacaacttttaacctc 6712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 5126 - 5169
Alignment:
Q  11 gacatcataaccacactaccaagcacggtatcaaaatcacgtat 54  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  5126 gacagcataaccacactaccaagcacggtatcaaaatcacgtat 5169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 116399 - 116631
Alignment:
Q  11 gacatcataaccacactaccaagcacggtatcaaaatcacgtatgtctagtatttcatgctaggcttggtattagctatcagaaaagttttgcacctcaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  116399 gacagcataaccacactaccaagcacggtatcaaaatcacgtatttctagtatttcatgctaggcttgttattagctatcagaaaagttttgcacctcaa 116498  T
Q  111 ttaagaaagctatcaaatgcttccaaattaaggaataactaatttctataaaatatccaattaggttcataactgttttcaacttatttccataagctct 210  Q
    ||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  116499 ttaagaaagctatcaaatgcttctaaattattgaataacttatttctataaaatatccaattaggttcataactgttttcaacttatttccataagctct 116598  T
Q  211 gcataataacttatcaaaacaacttttaacctc 243  Q
    |||||||||||||||||||||||||||||||||    
T  116599 gcataataacttatcaaaacaacttttaacctc 116631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 37588375 - 37588427
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 235  Q
    ||||||||| |||||||||||||||||| || |||||||||| ||||||||||    
T  37588375 ctgttttcagcttatttccataagctctccagaataacttatgaaaacaactt 37588427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 37690651 - 37690704
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataac-ttatcaaaacaactt 235  Q
    ||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||    
T  37690651 ctgttttcagcttatttccataagctctccataataactttatgaaaacaactt 37690704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 37526214 - 37526266
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 235  Q
    ||||||||| |||||||||||||||||| || || ||||||| ||||||||||    
T  37526214 ctgttttcagcttatttccataagctctccagaacaacttatgaaaacaactt 37526266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 15074764 - 15074816
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 235  Q
    ||||||||| |||||||||||||||| | ||  ||||||||| ||||||||||    
T  15074764 ctgttttcagcttatttccataagctttccagtataacttatgaaaacaactt 15074816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 14548736 - 14548788
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 235  Q
    ||||||||| |||||||||||||||||| || |||||||||| ||||||||||    
T  14548736 ctgttttcagcttatttccataagctctccagaataacttatgaaaacaactt 14548788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 26542591 - 26542541
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttatcaaaacaact 234  Q
    |||||||||||||||||||||| |||| ||||||| ||||| |||| ||||    
T  26542591 tgttttcaacttatttccataaactctccataatagcttatgaaaataact 26542541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 13371171 - 13371131
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttat 224  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  13371171 tgttttcagcttatttccataagctcttcataatagcttat 13371131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 2460167 - 2460214
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttatcaaaacaa 232  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  2460167 tgttttcaacttatttccataagctctccataatagctta-caaaacaa 2460214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 20512660 - 20512700
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttat 224  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  20512660 tgttttcagcttatttccataagctcttcataatagcttat 20512700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 27123368 - 27123415
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttatcaaaacaa 232  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  27123368 tgttttcaacttatttccataagctctccataatagctta-caaaacaa 27123415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 11264358 - 11264329
Alignment:
Q  181 aactgttttcaacttatttccataagctct 210  Q
    ||||||||||||||||||||||||||||||    
T  11264358 aactgttttcaacttatttccataagctct 11264329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 12792706 - 12792756
Alignment:
Q  181 aactgttttcaacttatttccataagctctgcataataacttatcaaaaca 231  Q
    ||||||||||| ||||||||| |||||||| || |||| ||||||||||||    
T  12792706 aactgttttcagcttatttccgtaagctcttcagaatagcttatcaaaaca 12792756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 28165155 - 28165105
Alignment:
Q  175 gttcataa-ctgttttcaacttatttccataagctctgcataataacttat 224  Q
    |||||||| |||||||||||||||||||||||||||| ||| ||| |||||    
T  28165155 gttcataagctgttttcaacttatttccataagctctccatgatagcttat 28165105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 43205366 - 43205316
Alignment:
Q  181 aactgttttcaacttatttccataagctctgcataataacttatcaaaaca 231  Q
    |||||||||||||||||||||||||||||| | | ||| ||||| ||||||    
T  43205366 aactgttttcaacttatttccataagctctccgtgatagcttatgaaaaca 43205316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 37034076 - 37034031
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttatcaaaa 229  Q
    ||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  37034076 tgttttcaacttatttctataagctctccataatatcttatgaaaa 37034031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 1939347 - 1939395
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaaca 231  Q
    |||||||||||||||||||||||||||| ||  ||| ||||| ||||||    
T  1939347 ctgttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 43065466 - 43065518
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttatcaaaacaacttt 236  Q
    |||||||| |||||||| ||||||||| ||  ||||||||| |||||||||||    
T  43065466 tgttttcagcttatttcaataagctctccacgataacttatgaaaacaacttt 43065518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 11795147 - 11795106
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttat 224  Q
    ||||||||| |||||||||||||||||| ||||||| |||||    
T  11795147 ctgttttcagcttatttccataagctctccataatagcttat 11795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 12361247 - 12361199
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaaca 231  Q
    ||||||||||||||||||||| |||||| |  |||||||||| ||||||    
T  12361247 ctgttttcaacttatttccattagctctcctgaataacttatgaaaaca 12361199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 15515593 - 15515544
Alignment:
Q  186 ttttcaacttatttccataagctctgcataataacttatcaaaacaactt 235  Q
    ||||||| ||||||||||||||| | ||| ||||||||| ||||||||||    
T  15515593 ttttcaatttatttccataagctatccatgataacttatgaaaacaactt 15515544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 35179194 - 35179137
Alignment:
Q  183 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaacttttaac 240  Q
    ||||||||| ||||||| |||||| ||| ||||||||||||| |||||| ||| ||||    
T  35179194 ctgttttcagcttattttcataagttctccataataacttatgaaaacagcttataac 35179137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 33643 - 33683
Alignment:
Q  184 tgttttcaacttatttccataagctctgcataataacttat 224  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  33643 tgttttcagcttatttccataagctcttcataatagcttat 33683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University