View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_83 (Length: 242)

Name: NF10579_low_83
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_83
NF10579_low_83
[»] chr2 (15 HSPs)
chr2 (18-226)||(28214106-28214314)
chr2 (18-226)||(28221970-28222178)
chr2 (18-226)||(32310522-32310730)
chr2 (18-213)||(32786542-32786737)
chr2 (18-226)||(32564090-32564298)
chr2 (18-221)||(32813753-32813956)
chr2 (18-213)||(32306405-32306600)
chr2 (18-105)||(32792925-32793012)
chr2 (16-224)||(28177370-28177583)
chr2 (18-120)||(28158816-28158918)
chr2 (18-63)||(32799593-32799638)
chr2 (147-226)||(32317489-32317567)
chr2 (147-224)||(28158711-28158788)
chr2 (147-224)||(28169280-28169357)
chr2 (173-224)||(28183155-28183206)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 28214106 - 28214314
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28214106 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 28214205  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28214206 ctcttcctctcaacaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 28214305  T
Q  218 agagtgatg 226  Q
    |||||||||    
T  28214306 agagtgatg 28214314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 28222178 - 28221970
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  28222178 aaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatatggcagtcttctcttaagccatcagctgttgatcagcaaacaataacc 28222079  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28222078 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 28221979  T
Q  218 agagtgatg 226  Q
    |||||||||    
T  28221978 agagtgatg 28221970  T

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Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 32310730 - 32310522
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32310730 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc 32310631  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||    
T  32310630 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcatt 32310531  T
Q  218 agagtgatg 226  Q
    |||||||||    
T  32310530 agagtgatg 32310522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 32786542 - 32786737
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32786542 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc 32786641  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32786642 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt 32786737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 32564090 - 32564298
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32564090 aaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc 32564189  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||    
T  32564190 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcatgtatgacatccctttgtcatt 32564289  T
Q  218 agagtgatg 226  Q
    |||||||||    
T  32564290 agagtgatg 32564298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 32813753 - 32813956
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32813753 aaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc 32813852  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||    
T  32813853 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggtactgcagatgacaatgcttgcatgtatgacatccctttgtcatt 32813952  T
Q  218 agag 221  Q
    ||||    
T  32813953 agag 32813956  T

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Target: chr2; HSP #7
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 32306600 - 32306405
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||    
T  32306600 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagaaaacaataacc 32306501  T
Q  118 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32306500 ctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt 32306405  T

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Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 32792925 - 32793012
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  32792925 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcag 32793012  T

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Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 28177583 - 28177370
Alignment:
Q  16 caaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaata- 114  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||| |||  | ||  |  ||||| |||||||||||||||||| ||| |||| ||     
T  28177583 caaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaacctagcactgctctctccagccatcagctgttgattagcgaacagtag 28177484  T
Q  115 ----accctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctt 210  Q
         |||||||||||| || |||||| ||||  |   ||||||||| ||||||  ||||||||||||||||||||| |||||| ||  ||||||| |||    
T  28177483 ccctcccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgacatcactt 28177384  T
Q  211 tgttattagagtga 224  Q
    |  | |||||||||    
T  28177383 ttatgttagagtga 28177370  T

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Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28158918 - 28158816
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataacc 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||| | || || |||||| ||||||| |||||||||| ||| |||| || ||    
T  28158918 aaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatctagcagtgttctctccagccatgagctgttgattagcgaacagtagcc 28158819  T
Q  118 ctc 120  Q
    |||    
T  28158818 ctc 28158816  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 32799593 - 32799638
Alignment:
Q  18 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32799593 aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 32799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 32317567 - 32317489
Alignment:
Q  147 tgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtgatg 226  Q
    |||||||||||||||| |  ||||| ||||||| ||||||| ||||||  |||||| |||||||| ||||||||||||||    
T  32317567 tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatccctttattattagagtgatg 32317489  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 28158788 - 28158711
Alignment:
Q  147 tgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 224  Q
    ||||||||||| |||||| |||||||||||||||| |||||  ||||| || |||||||| ||||  | |||||||||    
T  28158788 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttttctgttagagtga 28158711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 28169357 - 28169280
Alignment:
Q  147 tgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 224  Q
    ||||||||||| |||||| |||||||||||||||| |||||  ||||| || |||||||| ||||  | |||||||||    
T  28169357 tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttttctgttagagtga 28169280  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 28183206 - 28183155
Alignment:
Q  173 cactgcagatgacaatgcttgcttgtatgacatccctttgttattagagtga 224  Q
    ||||||||||||||| |||| | |||||||||||||||| || |||||||||    
T  28183206 cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtga 28183155  T

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