View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_87 (Length: 240)
Name: NF10579_low_87
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26879365 - 26879587
Alignment:
| Q |
1 |
cacaaactctgcacattaaatcacaagacacaatatgagtgaggaattttaacaggatctcagtgatgatccgcgcacatatcagttaggccatttggct |
100 |
Q |
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| T |
26879365 |
cacaaactctgcacattaaatcacaagacacaataagagtgaggaattttaacaggatcacagtgatgatccgcgcacatatcagttaggccatttggct |
26879464 |
T |
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| Q |
101 |
ctagttcaaggaattaggatagtaggggttgtaaatctggaagacagtatccagagggaatgaataacacatcaaacctagaggaaaaattgattgaaat |
200 |
Q |
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| T |
26879465 |
ctagttcaaggaattagaatagtaggggttgtaaatctggtagacagtatccagggggaatgaataacacatcaaacctagaggaaaaattgattgaaat |
26879564 |
T |
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| Q |
201 |
tgtatgcttctgaacaacggaaa |
223 |
Q |
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| T |
26879565 |
tgtatgcttctgaacaagggaaa |
26879587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40248847 - 40248893
Alignment:
| Q |
1 |
cacaaactctgcacattaaatcacaagacacaatatgagtgaggaat |
47 |
Q |
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|||||||||||||| ||||||||||||| ||| || ||||||||||| |
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| T |
40248847 |
cacaaactctgcacgttaaatcacaagaaacagtaagagtgaggaat |
40248893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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