View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_88 (Length: 240)
Name: NF10579_low_88
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38128930 - 38129153
Alignment:
| Q |
1 |
tctttctgtttttattatacttcttcttgtacatgtttctaattctcatgcagccccatcaagtgagtccatttatgtaacttttcttcagtgtcttaaa |
100 |
Q |
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| T |
38128930 |
tctttctgtttttattatacttcttcttgtacatgtttctaattctcatgcagccccatcaagtgagtccatttatgtcacttttcttcagtgtcttaaa |
38129029 |
T |
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| Q |
101 |
agccatactacccaaccaaatcaagtttccaacatagtctattcccaaaccaatgcatcatacacctctatttttcaagcctttattagaaatgctaggt |
200 |
Q |
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| T |
38129030 |
aaccatactacccaaccaaatcaagtttccaacatagtctattcccaaaccaatgcatcatacacctctatttttcaagcctttattagaaatgctaggt |
38129129 |
T |
|
| Q |
201 |
tcaacaccccctccaccacaaaac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
38129130 |
tcaacaccccctccaccacaaaac |
38129153 |
T |
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Back To:
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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 487504 - 487373
Alignment:
| Q |
30 |
tacatgtttctaattctcatgcagccccatcaagtgagtccatttatgtaacttttcttcagtgtcttaaaagccatactacccaaccaaatcaagtttc |
129 |
Q |
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||||||||||||||| ||||| |||||||||||| |||| |||||||||||||||| |||| ||||| |||| ||| || || || | ||||||| | |
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| T |
487504 |
tacatgtttctaattatcatgtagccccatcaagcgagtgcatttatgtaacttttgttcattgtctgaaaaaccacacaactgcacaatatcaagtgtt |
487405 |
T |
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| Q |
130 |
caacatagtctattcccaaaccaatgcatcatac |
163 |
Q |
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| T |
487404 |
caac--aatctattcccaaaccaatgcatcatac |
487373 |
T |
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