View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_89 (Length: 239)
Name: NF10579_low_89
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39576679 - 39576457
Alignment:
| Q |
1 |
tcttcttcaattctcatcactgcacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaat |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39576679 |
tcttcttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaat |
39576580 |
T |
|
| Q |
101 |
aagaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39576579 |
aagaatctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctc |
39576480 |
T |
|
| Q |
201 |
tttaccaaacagcaagaattttc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39576479 |
tttaccaaacagcaagaattttc |
39576457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 39522032 - 39521812
Alignment:
| Q |
3 |
ttcttcaattctcatcactgcacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataa |
102 |
Q |
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||||||||||||||||| | || ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39522032 |
ttcttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataa |
39521933 |
T |
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| Q |
103 |
gaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctctt |
202 |
Q |
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| T |
39521932 |
caacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtcaatcaccagtgtcttcacctctc |
39521833 |
T |
|
| Q |
203 |
taccaaacagcaagaattttc |
223 |
Q |
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|||||||||||||||||||| |
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| T |
39521832 |
aaccaaacagcaagaattttc |
39521812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39544824 - 39544612
Alignment:
| Q |
1 |
tcttcttcaattctcatcactgcacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaat |
100 |
Q |
| |
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||||||||||||| ||||| | || || || |||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
39544824 |
tcttcttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaat |
39544725 |
T |
|
| Q |
101 |
aagaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctc |
200 |
Q |
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|| || |||||||||||||||||||||| | ||||||| |||| | ||||| || ||| |||| || ||| | || |||| |||||| |||||||| |
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| T |
39544724 |
aacaacctttatattggtgaatcaaaccctacttacccaaaaacaagtttcag---aaaaagctccaaagtaacaagtcaatcaccagtgttttcacctc |
39544628 |
T |
|
| Q |
201 |
tttaccaaacagcaag |
216 |
Q |
| |
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| T |
39544627 |
tctaccaaacagcaag |
39544612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39525534 - 39525316
Alignment:
| Q |
1 |
tcttcttcaattctcatcactgcacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatg----- |
95 |
Q |
| |
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|||| |||||||||||||| | ||||||| | |||||||||||| | ||||| | ||||||||||| |||||||||||||| | |||| | || |
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| T |
39525534 |
tcttattcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatcagatagcaacgttactgttact |
39525435 |
T |
|
| Q |
96 |
-aaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaagttccatagaaaccaatccatcatcagtgtctt |
194 |
Q |
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||| ||| || |||||||||| |||||||||| |||||||||| | |||||| |||| ||||||||||||| || |||||||||| ||| |
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| T |
39525434 |
gaaagtaataaagtttatattggggaatcaaaccccaactaccctaaaacaagtttcagcaaaagc---tccatagaaaccagtcaatcatcagtgcctt |
39525338 |
T |
|
| Q |
195 |
cacctctttaccaaacagcaag |
216 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
39525337 |
cacctctctaccaaacagcaag |
39525316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 39581162 - 39581090
Alignment:
| Q |
56 |
acatacttcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaacc |
128 |
Q |
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||||||||||||||||| ||||||||| | || || | ||||| ||| || ||||||||||||||||||||| |
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| T |
39581162 |
acatacttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaacc |
39581090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39581929 - 39581842
Alignment:
| Q |
3 |
ttcttcaattctcatcactgcacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgt |
90 |
Q |
| |
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||||||||||||||||| | || ||| | |||| ||||||||| | ||||| | ||||||||||| |||||||| ||||||| |||| |
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| T |
39581929 |
ttcttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggataagatatcaacgt |
39581842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 3331422 - 3331477
Alignment:
| Q |
168 |
tagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttc |
223 |
Q |
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||||||| |||| || |||||| |||||||||||||||||| ||||||||||||| |
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| T |
3331422 |
tagaaacaaatcaataatcagttccttcacctctttaccaaagagcaagaattttc |
3331477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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