View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_9 (Length: 425)
Name: NF10579_low_9
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 26 - 406
Target Start/End: Complemental strand, 1912114 - 1911734
Alignment:
| Q |
26 |
gttcactaaattagtttcactctaactctatatatatttaccaaacattcccctttagcctcacatacaatttcaaaccatatctcccatttgcatattt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1912114 |
gttcactaaattagtttcactctaactctatatatatttaccaaacattcccctttagcctcacatacaatttcaaaccatatctcccatttgcatattt |
1912015 |
T |
|
| Q |
126 |
tgcaacattcctcttcattcttaaccatggcctcaaagaaatccttcatcataattttcttttttgctttaagcttctcaaacatgagcttgagcctagc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1912014 |
tgcaacattcctcttcattcttaaccatggcctcaaagaaatccttcatcataattttcttttttgctttaagcttctcaaacatgagcttgagcctagc |
1911915 |
T |
|
| Q |
226 |
agctagaaatcttttgcaagcaagtactactgaacaagctttaacaaatttcccaggctttccaccattgccttcattttcatttccaccactgcctaag |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1911914 |
agctagaaatcttttgcaagcaagtactactgaacaagctttaacaaatttcccaggctttccaccattgccttcattttcatttccaccactgcctaag |
1911815 |
T |
|
| Q |
326 |
ccagactgtcctccattcccaaacattccctccatccccaaattttcaaccattttcccattcctcaccccaccaccttcc |
406 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1911814 |
ccagattgtcctccattcccaaacattccctccatccccaaattttcaaccattttcccattcctcaccccaccaccttcc |
1911734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University