View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_92 (Length: 239)
Name: NF10579_low_92
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_92 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44542678 - 44542896
Alignment:
| Q |
1 |
gcaatttaaaaagatacacatttaccaatcaactatgtgtgatatgtgtatattaattaattgttatatcatacgatgtggcatcctcctcaagttggga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44542678 |
gcaatttaaaaagatacacatttactaatcaactatgtgtgatatgtgtatattaattaattgttatatcatacgatgtggcatcctcctcaagttggga |
44542777 |
T |
|
| Q |
101 |
tgttgaattttgaagagagtctttatcgtgagccaataataattgttggtggtgagactgaggatggatgatgggttttttcttatgttgtttgcttcca |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44542778 |
tgttgaattttgaagagagtgtttatcgtcagccaataataattgttggtgg------tgaggatggatgatgggttttttcttatgttgtttgcttcca |
44542871 |
T |
|
| Q |
201 |
aaagaagtcacagccatgaaacctg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44542872 |
aaagaagtcacagccatgaaacctg |
44542896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University