View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_94 (Length: 238)
Name: NF10579_low_94
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 7049059 - 7048842
Alignment:
| Q |
17 |
aatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaattaaatcaagatccccactgcaaaaaatacatcaattgccataaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7049059 |
aatggagtagtttagatcccttatccatgcttgagtagaccggaaaggaacaattaaatcaagatccccactgcaaaaaacacatcaattgccataaaaa |
7048960 |
T |
|
| Q |
117 |
atcaattagccttaagggcatccagaaagctatnnnnnnnncgaatttgactgctcgaatgtggacaatttactttagagggtaaaacaagtaatcccaa |
216 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
7048959 |
atcaattagccttaagtgcatccagaaagctataacaaaaacgaatttgattgctcgaatgcggacaatttactttagagggtaaaacaagtaatctcaa |
7048860 |
T |
|
| Q |
217 |
cagcgatgttaccagcac |
234 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
7048859 |
gagcgatgttaccagcac |
7048842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 7057978 - 7057763
Alignment:
| Q |
15 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaattaaatcaagatccccactgcaaaaaatacatcaattgccataaa |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| |
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| T |
7057978 |
acaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactacatcatgatccccactgcaaaaaacacatcaattgccataaa |
7057879 |
T |
|
| Q |
115 |
aaatcaattagccttaagggcatccagaaagctatnnnnnnnncgaatttgactgctcgaatgtggacaatttactttagagggtaaaacaagtaatccc |
214 |
Q |
| |
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||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
7057878 |
aaatcaacaagtcttaagggcatccagaaagctacaacaaaaacgaatttgactgctcgaacgtggacaatttactttagagggtaaaacaagtaatctc |
7057779 |
T |
|
| Q |
215 |
aacagcgatgttacca |
230 |
Q |
| |
|
|| |||||| |||||| |
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|
| T |
7057778 |
aatagcgatattacca |
7057763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 7041961 - 7041753
Alignment:
| Q |
15 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaattaaatcaagatccccactgcaaaaaatacatcaattgccataaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
7041961 |
acaatggagtagtttagatcccttatccaagcttgagtagacatgaaaggaacaactgcatcatgatccccactgcaaaaaacacatcaattgccataaa |
7041862 |
T |
|
| Q |
115 |
aaatcaattagccttaagggcatccagaaagctatnnnnnnnncgaatttgactgctcgaatgtggacaatttactttagagggtaaaacaagtaatccc |
214 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||||||||||| || ||| |||||||||||||| ||||||||||||||||||| | | |
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|
| T |
7041861 |
taatcagctagtcttaagggcatccagaaagctacaacgaaaacgaatttgactacttgaaagtggacaatttactctagagggtaaaacaagtaacctc |
7041762 |
T |
|
| Q |
215 |
aacagcgat |
223 |
Q |
| |
|
||| ||||| |
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|
| T |
7041761 |
aactgcgat |
7041753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 7028969 - 7028766
Alignment:
| Q |
15 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaattaaatcaagatccccactgcaaaaaatacatcaattgccataaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
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|
| T |
7028969 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaactaaatcaagatccccactgcaaaaaacacatcaattgccattaa |
7028870 |
T |
|
| Q |
115 |
aaatcaattagccttaagggcatccagaaagctatnnnnnnnncgaatttgactgctcgaatgtggacaatttactttagagggtaaaacaagtaatccc |
214 |
Q |
| |
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|||||| ||| | ||| |||||||||||||| || |||||| ||| | | || ||||||||| ||||||||| ||||||||||||||| | |
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|
| T |
7028869 |
aaatcagctagtcataatggcatccagaaagcaataagaaaaatgaatttcacttcgcaaaactggacaattcactttagagtgtaaaacaagtaatctc |
7028770 |
T |
|
| Q |
215 |
aaca |
218 |
Q |
| |
|
|||| |
|
|
| T |
7028769 |
aaca |
7028766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 6996575 - 6996459
Alignment:
| Q |
15 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaattaaatcaagatccccactgcaaaaaatacatcaattgccataaa |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| | |||| |||| ||||||| || || ||||||||||||||||| |
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| T |
6996575 |
acaatggagtagtttagattccttatccaagcttgagtagacatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaattgccataaa |
6996476 |
T |
|
| Q |
115 |
aaatcaattagccttaa |
131 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
6996475 |
aaatcagctagccttaa |
6996459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 7022231 - 7022155
Alignment:
| Q |
19 |
tggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaattaaatcaagatccccactgcaaaaa |
95 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||| |
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|
| T |
7022231 |
tggagtaatttagatcccttatccatgcttgagtagacatgaaaggaacaattgcatcaagaaccccactgccaaaa |
7022155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 7015489 - 7015435
Alignment:
| Q |
15 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaa |
69 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
7015489 |
acaatggagtagtttagattccttatccatgcttgagtagagatgaaaggaacaa |
7015435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 7005697 - 7005643
Alignment:
| Q |
15 |
acaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaacaa |
69 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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|
| T |
7005697 |
acaatggagtagtttagattccttatccaagcttgagtagagatgaaaggaacaa |
7005643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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