View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_96 (Length: 237)
Name: NF10579_low_96
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 37615434 - 37615643
Alignment:
| Q |
15 |
aagttttgatacatgagaactacaagttcaaagttgactagtaagaactgagtccaaaacatacataaagtttacgcctggtttttcccatccatatctc |
114 |
Q |
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| T |
37615434 |
aagttttgatacatgagaactacaagttcaaagttgactagtaagaactgagtccaaaacatacataaagtttacggctggtttttcccatcaatatctc |
37615533 |
T |
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| Q |
115 |
ttgctgctttcggcattcaaaacttcaaagcctgaagtagtttaaaccaaacacttgaggttaggaccatcaaataaaaatatgtatttgaatgttgaag |
214 |
Q |
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| T |
37615534 |
ttgctgctttcggcattcaaaacttcaaagcctgaagtagtttaaaccaaaaacttgaggttaggaccatcaaatcaaaatatgtatttgaatgttgaag |
37615633 |
T |
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| Q |
215 |
agacaatact |
224 |
Q |
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|||||||||| |
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| T |
37615634 |
agacaatact |
37615643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37615390 - 37615438
Alignment:
| Q |
1 |
atcaagttgagttgaagttttgatacatgagaactacaagttcaaagtt |
49 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37615390 |
atcaagttgagttgaagttttgatacatgaaaactacaagttcaaagtt |
37615438 |
T |
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