View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_97 (Length: 237)
Name: NF10579_low_97
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 11974945 - 11975148
Alignment:
| Q |
19 |
aattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttga |
118 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11974945 |
aattgtgatttgacaaaatctgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttga |
11975044 |
T |
|
| Q |
119 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcc |
218 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11975045 |
gtgtttgcaaagcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgcttaactatttcaaacccaattcc |
11975144 |
T |
|
| Q |
219 |
tttg |
222 |
Q |
| |
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|||| |
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|
| T |
11975145 |
tttg |
11975148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 12004769 - 12004972
Alignment:
| Q |
19 |
aattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttga |
118 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |
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| T |
12004769 |
aattgagatttgataaaatctgcaagagaggctacacttgcagcatcagccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttga |
12004868 |
T |
|
| Q |
119 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||| || || |||||||| |
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| T |
12004869 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcc |
12004968 |
T |
|
| Q |
219 |
tttg |
222 |
Q |
| |
|
|||| |
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|
| T |
12004969 |
tttg |
12004972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 12014442 - 12014639
Alignment:
| Q |
25 |
gatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgttt |
124 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
12014442 |
gatttgacaaattccgcaagagaagctacacttgcagcatcagcaacatctagttgatgaaatacaacaaaatcagataaaccagaggctttgagtgttt |
12014541 |
T |
|
| Q |
125 |
ccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcctttg |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||| |
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|
| T |
12014542 |
ccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctcaaatccaatccctttg |
12014639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 11984377 - 11984580
Alignment:
| Q |
19 |
aattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttga |
118 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| ||| ||||||||||| ||||| |||| |||||||||| || | |||| | ||||||| |
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|
| T |
11984377 |
aattgcgatttgacaaaatctgcaagagtagctacacttgcagcattagccacatctacttgataaaagacaacaaaatctgaaagaccagaagctttga |
11984476 |
T |
|
| Q |
119 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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|
| T |
11984477 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcacaactttgattccagctgaagctaactgcttaactatctcaaacccaattcc |
11984576 |
T |
|
| Q |
219 |
tttg |
222 |
Q |
| |
|
|||| |
|
|
| T |
11984577 |
tttg |
11984580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 12009867 - 12010064
Alignment:
| Q |
25 |
gatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgttt |
124 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |
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|
| T |
12009867 |
gatttaacaaaatctgcgagagaggctacacttgcggcatcagccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttgagtgttt |
12009966 |
T |
|
| Q |
125 |
ccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcctttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||| |||||||| || |||||||| || ||||||||||||||| |
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|
| T |
12009967 |
ccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattctagctgaagctaactgtttaactatctctaacccaattcctttg |
12010064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 11980020 - 11980223
Alignment:
| Q |
19 |
aattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttga |
118 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| | ||||| | |
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|
| T |
11980020 |
aattgggatttgacaaaatctgcaagagtagctacacttgcagcatttgccacatctagttgatgaaatacaacaaaatcagataaaccagatgctttaa |
11980119 |
T |
|
| Q |
119 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcc |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||| || || |||||||| |
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|
| T |
11980120 |
gtgtttccaatgcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctctaatccaattcc |
11980219 |
T |
|
| Q |
219 |
tttg |
222 |
Q |
| |
|
|||| |
|
|
| T |
11980220 |
tttg |
11980223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 11991884 - 11992087
Alignment:
| Q |
19 |
aattgtgatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttga |
118 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||||||||| | |||| | ||||| | |
|
|
| T |
11991884 |
aattgagatttgacaaaatctgcaagagatgctacacttgaagcatcagcaacatctagttgatgaaatacaacaaaatcagaaagaccagaagctttaa |
11991983 |
T |
|
| Q |
119 |
gtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||||| ||||| ||||| || ||||||||||| |
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|
| T |
11991984 |
gtgtttccaaagcatgaagacctcttttctcatctcttgatgtaagcaccactttgattacagctgaagctaactgctttactatctctaacccaattcc |
11992083 |
T |
|
| Q |
219 |
tttg |
222 |
Q |
| |
|
|||| |
|
|
| T |
11992084 |
tttg |
11992087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 11999557 - 11999754
Alignment:
| Q |
25 |
gatttgacaaaatttgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaatcagataaaccataggctttgagtgttt |
124 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||||| || | |||| | ||||||||||||| |
|
|
| T |
11999557 |
gatttgacaaaatctgcaagagatgctacacttgaagcatcagcaacatctagttgatgaaataaaacaaaatctgaaagaccagaagctttgagtgttt |
11999656 |
T |
|
| Q |
125 |
ccaaagcatgaagacctcttttctcatctcttgctgtaagcactactttgattccagccgaagctaattgcttaactatttcaaacccaattcctttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||| ||| | ||||| ||||| |||||||||||| |
|
|
| T |
11999657 |
ccaaagcatgaagacctcttttctcatctcttgctgtcagcacaactttgattccatctgaagctaactgccttactatctcaaatccaattcctttg |
11999754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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