View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_high_1 (Length: 445)
Name: NF10580_high_1
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 26187301 - 26187101
Alignment:
| Q |
20 |
ccctactaatataatctctagagctattctagctcagatgtgataaattgtgtgactcattttaagactaaactgcttgcaagataatttcgtagatgct |
119 |
Q |
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| T |
26187301 |
ccctactaatataatctctagagctattccagctcagatgtgataaattgtgtgactcattttaagactaaactgcttgcaagataatttcgtagatact |
26187202 |
T |
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| Q |
120 |
aaaagtctgannnnnnnatgggtaagaaaaatataatttgataagtttatatgaattgaaaatatatttaattattggatcatgctatgacaattgttaa |
219 |
Q |
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| T |
26187201 |
aaaagtctgatttttttatgggtaagaaaaatataatttgataagtttatatgaattgaaaatatatttaattattggatcatgctatgacaattgttaa |
26187102 |
T |
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| Q |
220 |
a |
220 |
Q |
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| |
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| T |
26187101 |
a |
26187101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 26187011 - 26186875
Alignment:
| Q |
303 |
cactttttcaactttggaaattgtttcctcaaaaataaaactttagaaattcnnnnnnnagaagttggaaaagagttcatttggatgcaaaa-tttatat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26187011 |
cactttttcaactttggaaattgtttcctcaaaaataaacctttagaaattctttttttagaagttggaaaagagttcatttggatgcaaaattttatat |
26186912 |
T |
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| Q |
402 |
actcttttgttcatatatatataagtaccctatgctt |
438 |
Q |
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| T |
26186911 |
actcttttgttcatatatatataagtaccctttgctt |
26186875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 26170480 - 26170378
Alignment:
| Q |
303 |
cactttttcaactttggaaattgtttcctcaaaaataaaactttagaaattcnnnnnnnagaagttggaaaagagttcatttggatgcaaaatttatata |
402 |
Q |
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| T |
26170480 |
cactttttcaactttgaaaattgtttcctctaaaataaaactttagaaattcttaatttagaagttggaaaagagttattttggatgcaaaatatatata |
26170381 |
T |
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| Q |
403 |
ctc |
405 |
Q |
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||| |
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| T |
26170380 |
ctc |
26170378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 26170622 - 26170587
Alignment:
| Q |
157 |
ttgataagtttatatgaattgaaaatatatttaatt |
192 |
Q |
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| T |
26170622 |
ttgataagtttatatgaattgaaaatatatttaatt |
26170587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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