View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_high_17 (Length: 250)
Name: NF10580_high_17
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35895083 - 35895320
Alignment:
| Q |
1 |
taactcattagcttaataaaacaaaaataacacacgcaaacaagacatgacaattttcacaattagagaatattcacctgccactgtgactgaagaatta |
100 |
Q |
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| T |
35895083 |
taactcattagcttaataaaacaaaaataactcacgcaaacaagacatgacaatttccacaattagagaatattcacctgccactgtgactgaagaatta |
35895182 |
T |
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| Q |
101 |
caatccttggatgacttggaaatcaaggtttcttgcactttttgacatagagagcatgccatctggactgctctgacagcaacatccaattctttggaat |
200 |
Q |
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| T |
35895183 |
caatccttg---------gaaatcaaggtttcttgcactttttgacatagagagcatgccatctggactgctctgacagcaacatccaattctttggaat |
35895273 |
T |
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| Q |
201 |
attcctctgattgtgagacaagatcaaccatttgtctgtgctcctcc |
247 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
35895274 |
attcttctgattgtgagacaagaccaaccatttgtctgtcctcctcc |
35895320 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 3109629 - 3109541
Alignment:
| Q |
116 |
ttggaaatcaaggtttcttgcactttttgacatagagagcatgccatctggactgctctgacagcaacatccaattctttggaatattc |
204 |
Q |
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||||||||||| | || |||||| | ||||| || || || ||||| || |||||||||||||||||||||||||| ||||||||||| |
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| T |
3109629 |
ttggaaatcaaactctcctgcactctctgacaaagtgaacaagccatttgcactgctctgacagcaacatccaattccttggaatattc |
3109541 |
T |
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