View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10580_high_23 (Length: 240)

Name: NF10580_high_23
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10580_high_23
NF10580_high_23
[»] chr1 (3 HSPs)
chr1 (1-220)||(9956269-9956495)
chr1 (166-201)||(11022107-11022142)
chr1 (157-201)||(33052006-33052050)
[»] chr8 (3 HSPs)
chr8 (24-92)||(30863345-30863413)
chr8 (24-96)||(34215431-34215503)
chr8 (25-96)||(6762515-6762586)
[»] chr3 (7 HSPs)
chr3 (157-201)||(14779402-14779446)
chr3 (157-201)||(35161587-35161631)
chr3 (24-92)||(54711858-54711926)
chr3 (25-92)||(21667335-21667402)
chr3 (25-92)||(21682541-21682608)
chr3 (160-201)||(55229583-55229624)
chr3 (157-201)||(53220408-53220452)
[»] chr5 (4 HSPs)
chr5 (158-201)||(33365266-33365309)
chr5 (157-201)||(28299272-28299316)
chr5 (26-92)||(29287039-29287105)
chr5 (26-92)||(42946330-42946396)
[»] scaffold0020 (1 HSPs)
scaffold0020 (157-201)||(133273-133317)
[»] chr6 (3 HSPs)
chr6 (161-201)||(19231334-19231374)
chr6 (25-96)||(14658117-14658188)
chr6 (161-201)||(6062059-6062099)
[»] scaffold0150 (1 HSPs)
scaffold0150 (25-92)||(15122-15189)
[»] scaffold0018 (1 HSPs)
scaffold0018 (25-92)||(134294-134361)
[»] chr7 (3 HSPs)
chr7 (24-74)||(23036110-23036160)
chr7 (157-201)||(47947479-47947523)
chr7 (157-201)||(47952909-47952953)
[»] chr4 (2 HSPs)
chr4 (157-199)||(1601983-1602025)
chr4 (157-201)||(2183236-2183280)
[»] chr2 (2 HSPs)
chr2 (157-203)||(45084974-45085020)
chr2 (157-201)||(27016411-27016454)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9956495 - 9956269
Alignment:
Q  1 tcaatggattgattttattgaacacactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaattaaacaca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  9956495 tcaatggattgattttattgaacacattactgcaaaattgggaaaatatggcgcccatttactagcgcttttaacccgaaagcgctataaatcaaacaca 9956396  T
Q  101 t--actttagatagtgctttaaacaaagaacgctttctattatgctatgtttataca-----tgggccgttacaataaaattggaggcttggctctaata 193  Q
    |  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||| ||||||||    
T  9956395 tagactttagatggtgctttaaacaaagaacgctttctattatgctatgtttatacatgttctgggccgttacaataaaattggaggcttgcctctaata 9956296  T
Q  194 ttaaaaattgttgggtcacgaggggag 220  Q
    |||||||||||||| ||| ||||||||    
T  9956295 ttaaaaattgttggatcatgaggggag 9956269  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 11022107 - 11022142
Alignment:
Q  166 caataaaattggaggcttggctctaatattaaaaat 201  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11022107 caataaaattggaggctcggctctaatattaaaaat 11022142  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 33052050 - 33052006
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| ||||||||||||| |||  |||||||||||||||||    
T  33052050 gggccgttccaataaaattggaagctcagctctaatattaaaaat 33052006  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 30863345 - 30863413
Alignment:
Q  24 acactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    |||||||| ||||||||||||||||| |||| || |||||||||||||||||   ||||| ||||||||    
T  30863345 acactactacaaaattgggaaaatatagcgctccattactagcgcttttaacataaaagcgctataaat 30863413  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 34215503 - 34215431
Alignment:
Q  24 acactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaattaaa 96  Q
    |||||||| ||||||||||||||||| ||||| | | | ||||||||||||| | ||||| ||||||||||||    
T  34215503 acactactacaaaattgggaaaatatagcgcctcataaatagcgcttttaacactaaagcgctataaattaaa 34215431  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 6762515 - 6762586
Alignment:
Q  25 cactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaattaaa 96  Q
    ||||||| ||||||||||||||||| ||||| | | | ||||||||||||| | ||||| ||||||||||||    
T  6762515 cactactacaaaattgggaaaatatagcgcctcataaatagcgcttttaacactaaagcgctataaattaaa 6762586  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 14779446 - 14779402
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  14779446 gggccgttccaataaaattggaggctcggctctaatattaaaaat 14779402  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 35161587 - 35161631
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||    
T  35161587 gggccgtttcaataaaatttgaggctcggctctaatattaaaaat 35161631  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 54711926 - 54711858
Alignment:
Q  24 acactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    |||||||| |||||| | ||||| |||||||||||||| |||||||| |||| | ||||| ||||||||    
T  54711926 acactactacaaaatggtgaaaaaatggcgcccctttaatagcgcttataacactaaagcgctataaat 54711858  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 21667402 - 21667335
Alignment:
Q  25 cactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    ||||||| |||||| | ||||| |||||||||||||| |||||||| |||| | ||||| ||||||||    
T  21667402 cactactacaaaatggtgaaaaaatggcgcccctttaatagcgcttataacactaaagcgctataaat 21667335  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 21682608 - 21682541
Alignment:
Q  25 cactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    ||||||| |||||| | ||||| |||||||||||||| |||||||| |||| | ||||| ||||||||    
T  21682608 cactactacaaaatggtgaaaaaatggcgcccctttaatagcgcttataacactaaagcgctataaat 21682541  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 55229583 - 55229624
Alignment:
Q  160 ccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    ||||| ||||||||||||||||| || |||||||||||||||    
T  55229583 ccgttccaataaaattggaggctcggttctaatattaaaaat 55229624  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 53220408 - 53220452
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||| ||| ||||||||||||||||| |||||||||||| |||||    
T  53220408 gggctgttccaataaaattggaggctcggctctaatattgaaaat 53220452  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 33365266 - 33365309
Alignment:
Q  158 ggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||    
T  33365266 ggccgtttcaataaaattggaggctcggctctaatattaaaaat 33365309  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 28299316 - 28299272
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||    
T  28299316 gggccgtttcaataaaattggaggctcgactctaatattaaaaat 28299272  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 29287105 - 29287039
Alignment:
Q  26 actactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    |||||| |||||||| ||||||||  |||||||| | |||||||||||||  |||||| ||||||||    
T  29287105 actactacaaaattgagaaaatataacgccccttaaatagcgcttttaacatgaaagcgctataaat 29287039  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 42946396 - 42946330
Alignment:
Q  26 actactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    |||||| ||||||||||||||||| ||||| ||||| || |||||||||| | ||| | ||||||||    
T  42946396 actactacaaaattgggaaaatatagcgccactttaataacgcttttaacactaaaacgctataaat 42946330  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 133317 - 133273
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||    
T  133317 gggccgttccaataaaattggaggcttgggtctaatatcaaaaat 133273  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 19231374 - 19231334
Alignment:
Q  161 cgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  19231374 cgttccaataaaattggaggctcggctctaatattaaaaat 19231334  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 14658188 - 14658117
Alignment:
Q  25 cactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaattaaa 96  Q
    ||||||| ||||||||||||||||| ||||| | |   ||||||||||||| | ||||| ||||||||||||    
T  14658188 cactactacaaaattgggaaaatatagcgcctcatatatagcgcttttaacactaaagcgctataaattaaa 14658117  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 6062099 - 6062059
Alignment:
Q  161 cgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||| ||||||||||||||||| | ||||||||||||||||    
T  6062099 cgttccaataaaattggaggctcgactctaatattaaaaat 6062059  T

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Target: scaffold0150 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 15122 - 15189
Alignment:
Q  25 cactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    ||||||| ||||||||||||||||| |||| || ||| |||||||||||||   ||||| ||||||||    
T  15122 cactactacaaaattgggaaaatatagcgctccattaatagcgcttttaacataaaagcgctataaat 15189  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 134361 - 134294
Alignment:
Q  25 cactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaacccgaaagcactataaat 92  Q
    ||||||| ||||||| ||||||||| |||| || ||| |||||||||||||  |||||| ||||||||    
T  134361 cactactacaaaattaggaaaatatagcgctccattaatagcgcttttaacatgaaagcgctataaat 134294  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 23036160 - 23036110
Alignment:
Q  24 acactactgcaaaattgggaaaatatggcgcccctttactagcgcttttaa 74  Q
    |||||||| ||||||||||||||||| ||||| | ||| ||||||||||||    
T  23036160 acactactacaaaattgggaaaatatagcgcctcattaatagcgcttttaa 23036110  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 47947479 - 47947523
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||| ||| ||||||||||||| | ||||||||||||||||||||    
T  47947479 gggctgttccaataaaattggaagtttggctctaatattaaaaat 47947523  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 47952909 - 47952953
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||| ||| ||||||||||||| | ||||||||||||||||||||    
T  47952909 gggctgttccaataaaattggaagtttggctctaatattaaaaat 47952953  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 1602025 - 1601983
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaa 199  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  1602025 gggccggtccaataaaattggaggctcggctctaatattaaaa 1601983  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 2183280 - 2183236
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| || |||||||||||||| |||||| |||||||||||    
T  2183280 gggccgttccagtaaaattggaggctcggctctgatattaaaaat 2183236  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 45085020 - 45084974
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaattg 203  Q
    |||||||| ||||||||||||||||  ||||||||||||| ||||||    
T  45085020 gggccgttccaataaaattggaggcccggctctaatattagaaattg 45084974  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 27016454 - 27016411
Alignment:
Q  157 gggccgttacaataaaattggaggcttggctctaatattaaaaat 201  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||    
T  27016454 gggccgttccaa-aaaattggaggctcggctctaatattaaaaat 27016411  T

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