View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10580_high_24 (Length: 240)
Name: NF10580_high_24
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_high_24 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 35967071 - 35966848
Alignment:
| Q |
17 |
aatttgtctgaatggccacaagaatctgagtcccgaatttgatacccacgccgtttgaaaattcattttttacactatcaaatcaaatcattaccaccct |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35967071 |
aatttgtctgaatggccagaagaatctgagtccagaatttgatacccacgccgtttgaaaattcattttttacactatcaaatcaaatcattaccaccct |
35966972 |
T |
|
| Q |
117 |
tttcttaaatcttcactgattatattctgcgtcaactctcaaatcatgttttacgttacccataaaatatttgtcgcaatttaacatcattccatttttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
35966971 |
tttcttaaatcttcactgattatattctgagtcaactctcaaatcatgttttacgttacccataaaatatttgtcccaatttaacatcattcaatttttt |
35966872 |
T |
|
| Q |
217 |
aacgatcttgaccagatatttttt |
240 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
35966871 |
aacgatcttgaccagatttttttt |
35966848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University