View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_high_27 (Length: 233)
Name: NF10580_high_27
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 9122390 - 9122177
Alignment:
| Q |
1 |
ctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcga |
100 |
Q |
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| T |
9122390 |
ctaagattggttaatcttgtccttttgggaaagtggcgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcaa |
9122291 |
T |
|
| Q |
101 |
aaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctc-aactggtggaaaaaggtctccttattggaaacaagccagcctga |
199 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||| |
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| T |
9122290 |
aaaggtctatgtgggatcatcgcggggggagggtgataggtttaagaggtgtctcaaactggtggaaaaagatgtccttattggaaacaagtcagcctga |
9122191 |
T |
|
| Q |
200 |
gtctactgattggt |
213 |
Q |
| |
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||||||| |||||| |
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| T |
9122190 |
gtctactaattggt |
9122177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 18101570 - 18101656
Alignment:
| Q |
2 |
taagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggag |
88 |
Q |
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| T |
18101570 |
taagattggttaatcttgccctattagggaagtgacgttggaggtttttcacgagaggggaggctttgtggaaagatattattggag |
18101656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 5219660 - 5219750
Alignment:
| Q |
142 |
ttaagaggtgtctcaa-ctggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctca |
231 |
Q |
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| T |
5219660 |
ttaagaggtgtctcaaactagtggaaagagatctccttattgggatcgagttagcctgagtctactaattggttctctgaaagtatcctca |
5219750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 12545917 - 12545703
Alignment:
| Q |
1 |
ctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcga |
100 |
Q |
| |
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|||||||| ||||||||| |||||| | |||||| |||| || ||||||||| || || ||||| |||| ||||||||||||||| |||||||| || |
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| T |
12545917 |
ctaagattagttaatctttcccttttggggaagtggcgttgtagattgatcacaggagggaaggctttgtgtgaagatattattggagtgagatatgtga |
12545818 |
T |
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| Q |
101 |
aaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtct-caactggtggaaaaaggtctccttattggaaacaagccagcctga |
199 |
Q |
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|| ||||||||||| ||||||| ||||| |||||| ||||||||| || ||| |||||||||||| | ||||||||||| ||||||| || ||||| |
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| T |
12545817 |
aagggtctatgtggaatcatcgtagggggcaggcgatgggtttaagatgtatctgaaactggtggaaagtgatctccttattgaaaacaagtcaacctga |
12545718 |
T |
|
| Q |
200 |
gtctactgattggtt |
214 |
Q |
| |
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| T |
12545717 |
gcctactgattggtt |
12545703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 13956052 - 13956267
Alignment:
| Q |
2 |
taagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcgaa |
101 |
Q |
| |
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||||||| ||||||||| |||||| |||||| |||||||||||||||||||| || || || | || ||| ||||||||||||| |||||| ||| |
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| T |
13956052 |
taagattagttaatctttcccttttgaggaagtggcgttggaggttgatcacaagagggtagactttatgaaaatatattattggagcaagatatttgaa |
13956151 |
T |
|
| Q |
102 |
aaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctcaactggtggaaaaaggtctccttattggaaacaagccagcctgagt |
201 |
Q |
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| T |
13956152 |
agggcttatgtgagatcatcatggggggcacacggtgggtttaagaggtgtc-aaactggtgcaaggagatctccttattgggaacatgtcagtctcagt |
13956250 |
T |
|
| Q |
202 |
ctactgattggttctct |
218 |
Q |
| |
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||| ||||||||||||| |
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| T |
13956251 |
ctattgattggttctct |
13956267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 2487674 - 2487858
Alignment:
| Q |
1 |
ctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatg-ggaggctctgtggaaagatattattggagcgagatatgcg |
99 |
Q |
| |
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||||||||||||||||| ||||| | |||||||| ||||||||||||| | | | ||||||| |||||||||||||||| ||||| |||||| | |
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| T |
2487674 |
ctaagattggttaatctaactcttttgggcaagtggtgatggaggttgatcaaagggggaggaggctttgtggaaagatattataggagccagatatctg |
2487773 |
T |
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| Q |
100 |
aaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctc-aactggtggaaaaaggtctccttattgg |
183 |
Q |
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||| ||||| || |||||| | |||||| ||||| | ||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
2487774 |
aaagggtctcaatgtgatcattgtggggggcgggcgggggttttaagaggtgtctcaaactggtggaatgagatctccttattgg |
2487858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 7809215 - 7809117
Alignment:
| Q |
5 |
gattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcgaaaa |
103 |
Q |
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||||| ||||||||||| || | | |||||| |||||||||||||||| || |||||| | ||| ||||||||||||||||||||||||||| |||| |
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| T |
7809215 |
gattgattaatcttgtctttgtagggaagtggcattggaggttgatcacaggaggggaggttttgttgaaagatattattggagcgagatatgcaaaaa |
7809117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 30869162 - 30869252
Alignment:
| Q |
142 |
ttaagaggtgtctcaa-ctggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctca |
231 |
Q |
| |
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||||||| |||||||| |||||||||| || | |||||||||| | |||| || |||| || |||||||||||||||||| | |||||||| |
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| T |
30869162 |
ttaagagatgtctcaaactggtggaaagagatatccttattgggatcaagtcaacctgggtttactgattggttctctaaaagtatcctca |
30869252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 14729498 - 14729405
Alignment:
| Q |
39 |
ttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcgaaaaggtctatgtgggatcatcgcggggggagg |
132 |
Q |
| |
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|||||||||||||||| || | ||||| || | ||||||||||||||||| |||||| |||| ||| | |||||||||||| ||||||||| |
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| T |
14729498 |
ttggaggttgatcacacgagagtaggctttgcgaaaagatattattggagcaagatatttgaaagggttttcgtgggatcatcgtggggggagg |
14729405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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