View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_high_3 (Length: 392)
Name: NF10580_high_3
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 32640544 - 32640187
Alignment:
| Q |
16 |
agacaaactaatcgatttcgggcacacttgtgatttttaactaacgataatacagtgagaagtgaatgtttcttctatgtttaactggttttagacaaac |
115 |
Q |
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| T |
32640544 |
agacaaactaatcgatttcgggcacacttgtgatttttaactaacgataatacagtgagaagtgaatgtttcttctatgtttaactggttttagacaaac |
32640445 |
T |
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| Q |
116 |
taaataaaaatgagctatactaaccagcttttaaaaaagatgtaatcataattcttttgattaccaatttgtcacataatcagtatcatacacttttatg |
215 |
Q |
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| T |
32640444 |
taactaaaaatgagctatactaaccagcttttaaaaaagatgtaatcataattcttttgattaccaatttgtcacataatcagtatcatacacttttatg |
32640345 |
T |
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| Q |
216 |
ttttcatatcttgacaatgactttctaattcctttacacaattatttggaaaactatttttcttgtttaccatgattttattaaggatttcacaactaat |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640344 |
ttttcatatcttgacaatgactttctaattccgttacacaattatttggaaaactatttttcttgtttaccatgattttattaaggatttcacaactaat |
32640245 |
T |
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| Q |
316 |
tcaa-aaaactaccttaatttcagtgtgttagagaaatcctaattacaaaccctcaac |
372 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32640244 |
tcaaaaaaactacctaaatttcagtgtgttagagaaatcctaattacaaaccctcaac |
32640187 |
T |
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