View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_1 (Length: 636)
Name: NF10580_low_1
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 21 - 619
Target Start/End: Original strand, 11749126 - 11749733
Alignment:
| Q |
21 |
tcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcag |
120 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11749126 |
tcaagaaagcgagcattcatttttcctgaatcgcaaagcaacgcacaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcaa |
11749225 |
T |
|
| Q |
121 |
catggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataag |
220 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11749226 |
catgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacccaaataag |
11749325 |
T |
|
| Q |
221 |
ggattcatcaacaaacccaattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcattaatttca |
320 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11749326 |
ggattcatcaacaaaccccattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcatcaatttca |
11749425 |
T |
|
| Q |
321 |
tgcaaaacaccatcatcttcactgctatcatcatcatcatcaatttgttgaatgtgaatgaatgatgcatatctctttgcaacgccattgtaaaactgtc |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11749426 |
cgcaaaacaccatcatcttcactactatcataatcatcatcaatttgttgaatgggaatgaatgatgcatatctctttgcaacgccatcgtaaaactgtt |
11749525 |
T |
|
| Q |
421 |
tgttcct---------atcatcatcatcatcactttcagttccactttcattgctaacgatataatcaggcaatggattttgattctctatcatttcttt |
511 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
11749526 |
tgttcctatcatcatcatcatcatcatcatcactttcagttccactttcattgctaacgatataaccaagcaatggattttgattctctatcatttcttt |
11749625 |
T |
|
| Q |
512 |
cctctaatcatcgtcatcagtgacgtcactgataacgatgatgttgttatattcgaaaccgtgaccatgttgttgttgggttatagaagctacattgctg |
611 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11749626 |
cctctgatcatcgtcatcagtgacgtcactgataacgatgatgttgttatattcgaaaccgtggccatgttgttgttgggttatagaagctacattgctg |
11749725 |
T |
|
| Q |
612 |
agtggagg |
619 |
Q |
| |
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|||||||| |
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|
| T |
11749726 |
agtggagg |
11749733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 52011317 - 52011608
Alignment:
| Q |
21 |
tcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcag |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | ||| |||| |||||||||||||| |||||||| || ||||||||| ||||||| |||||||| |
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|
| T |
52011317 |
tcaagaaagcgacaattcatttttctcgaatcacataccaacgcgctaagcctttgtttgagctcatccgaaacaccatcaagcgaaaccattccatcag |
52011416 |
T |
|
| Q |
121 |
catggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataag |
220 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||| ||| |||||||| | ||||||| |||||||||||||||| || ||||||||||| ||||||| |
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|
| T |
52011417 |
catggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaacccaaataaa |
52011516 |
T |
|
| Q |
221 |
ggattcatcaacaaacccaattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcat |
312 |
Q |
| |
|
|||||| | ||||| ||| |||||||| |||| ||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |||||| |
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|
| T |
52011517 |
ggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagcatcat |
52011608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 52001452 - 52001753
Alignment:
| Q |
21 |
tcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcag |
120 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||| |||| |||||||||||| | |||| | || ||||||||| ||| | | ||||||| |
|
|
| T |
52001452 |
tcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaagcctttgttttagtgcatcagaaacaccatcaagcgaagcaagtccatcaa |
52001551 |
T |
|
| Q |
121 |
catggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataag |
220 |
Q |
| |
|
|||| || ||||| ||||| ||||| |||| || |||||||||||| || |||| |||| |||||||| |||||| ||| | ||| ||| |||| |
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|
| T |
52001552 |
catgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacccaagtaag |
52001651 |
T |
|
| Q |
221 |
ggattcatcaacaaacccaattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcattaatttca |
320 |
Q |
| |
|
||||||||| |||||||| |||| ||| |||| | ||||||||||||||||||||||| || || |||||||||||||||||| |||||| || |||| |
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|
| T |
52001652 |
ggattcatcgacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcatcaacttca |
52001751 |
T |
|
| Q |
321 |
tg |
322 |
Q |
| |
|
|| |
|
|
| T |
52001752 |
tg |
52001753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 145 - 322
Target Start/End: Complemental strand, 51988057 - 51987880
Alignment:
| Q |
145 |
acaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataagggattcatcaacaaacccaatttt |
244 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| || ||||||||||| |||| ||| | | |||||||| ||||||||||||| ||| |||| |
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|
| T |
51988057 |
acaattcttgcaatgaaggaacactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagccctttttt |
51987958 |
T |
|
| Q |
245 |
cttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcattaatttcatg |
322 |
Q |
| |
|
| || ||||||| |||| ||||||||||||||| |||| || |||||||| |||||||||||||||| | ||||||| |
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|
| T |
51987957 |
catgcttttggcgattctttcttgaatagctttaattgctttagagaaaggtgttggagaaccatcatcagtttcatg |
51987880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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