View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_10 (Length: 343)
Name: NF10580_low_10
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 6069402 - 6069090
Alignment:
| Q |
18 |
acatgtatcccgagtctgttgcaatgtcaaatagctactgactcctccattacctttaatttgcttcctgatcgttccaacctgctaggattcatatact |
117 |
Q |
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| T |
6069402 |
acatgtatcccgagtctgttgcaatgtcaaatagctactgactcctccattacctttaatttgcttcctgatcattccaacctgctaggattcatatact |
6069303 |
T |
|
| Q |
118 |
cggtggttctttctccagctggtggagatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctg |
217 |
Q |
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| T |
6069302 |
cagtggttctttctccagctggtggagatggaacgaagaagggtgaagctagaataaaatgtcaatgcaacttgggagaacaaggtataaaggttagctt |
6069203 |
T |
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| Q |
218 |
gctaaatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatt |
317 |
Q |
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| T |
6069202 |
gctaaatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatt |
6069103 |
T |
|
| Q |
318 |
tgttttgagttct |
330 |
Q |
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| T |
6069102 |
tgttttgagttct |
6069090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 330
Target Start/End: Complemental strand, 6193784 - 6193476
Alignment:
| Q |
22 |
gtatcccgagtctgttgcaatgtcaaatagctactgactcctccattacctttaatttgcttcctgatcgttccaacctgctaggattcatatactcggt |
121 |
Q |
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| T |
6193784 |
gtatcccgaggctattccaatgtctaacagcttctgactcttccattaccattacattgcttcctgatcgttccaacttgctgggattcatatactcagt |
6193685 |
T |
|
| Q |
122 |
ggttctttctccagctggtggagatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggcta |
221 |
Q |
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| T |
6193684 |
ggttctttctccagcaggtggaaatggaatgaagggtggaggagctaggataaagtgtcaatgcaacttgggagaagaaggtataaaagctacctggcta |
6193585 |
T |
|
| Q |
222 |
aatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgtt |
321 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||| |
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| T |
6193584 |
aatactgatgtcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagtattctcaaattttatcaacccgagatttgtt |
6193485 |
T |
|
| Q |
322 |
ttgagttct |
330 |
Q |
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| ||||||| |
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| T |
6193484 |
tcgagttct |
6193476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 6176413 - 6176364
Alignment:
| Q |
248 |
ggatcatgtttatgtgtggtatgatccattccattgtgacagcattctca |
297 |
Q |
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| T |
6176413 |
ggatcatgtttttgtatggtatgatccataccattatgacagcatactca |
6176364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 37453190 - 37453498
Alignment:
| Q |
22 |
gtatcccgagtctgttgcaatgtcaaatagctactgactcctccattacctttaatttgcttcctgatcgttccaacctgctaggattcatatactcggt |
121 |
Q |
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|||||||||| ||||| ||||||||| |||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||| ||||| |||||||| || |
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| T |
37453190 |
gtatcccgaggctgttcaaatgtcaaacagctgctgactcctccattaccattacgttgcttcctgaacgttccaacttgcttggatttatatactcagt |
37453289 |
T |
|
| Q |
122 |
ggttctttctccagctggtggagatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggcta |
221 |
Q |
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||||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| | ||||||| |
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| T |
37453290 |
ggttctttctccagcaggtggaaatggaatgaagaagggtgaagctcgaataaagtgtcaatgcagcttgggaaaagaaggtataaaggcttcctggcta |
37453389 |
T |
|
| Q |
222 |
aatactgattgcacagaactgaactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgtt |
321 |
Q |
| |
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|||||| || ||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||||| |
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| T |
37453390 |
aatactcatgtcacagaactaaactcagatcatacttatgtgtggtatgatccattccattgtgacagcattctcaaattttatcaacctaaaatttgtt |
37453489 |
T |
|
| Q |
322 |
ttgagttct |
330 |
Q |
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||||||||| |
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| T |
37453490 |
ttgagttct |
37453498 |
T |
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