View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10580_low_11 (Length: 323)

Name: NF10580_low_11
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10580_low_11
NF10580_low_11
[»] chr3 (8 HSPs)
chr3 (16-314)||(33609126-33609424)
chr3 (20-314)||(33618301-33618595)
chr3 (147-314)||(33627516-33627683)
chr3 (135-240)||(33588484-33588589)
chr3 (135-240)||(33595656-33595761)
chr3 (135-240)||(33602787-33602892)
chr3 (150-240)||(33562979-33563069)
chr3 (147-313)||(33622491-33622657)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 33609424 - 33609126
Alignment:
Q  16 cagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagatataacgttagacacaaggctaacggatccaagtacaatggcggaaattaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33609424 cagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacacaaggctaacggatccaagtacaatggcggaaattaa 33609325  T
Q  116 agcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33609324 agcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaat 33609225  T
Q  216 gccatcaccaagtgaggtcgatattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttct 314  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33609224 gccatcaccaagtgaggtcgatactccctttttaatatggttttaaagggctcttggttaaccgattttgcaagttctattgacttaataagttcttct 33609126  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 33618595 - 33618301
Alignment:
Q  20 tatgaacaggaatcttcgaccaaatcgatcaacaataccggcagatataacgttagacacaaggctaacggatccaagtacaatggcggaaattaaagcg 119  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||| ||||||||| |||||||||| ||||||||||| ||||||     
T  33618595 tatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggcggaaagtaaagct 33618496  T
Q  120 ccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgcca 219  Q
    |||||  |||| || |||||||| || |||||||| |||||||| || || || || |||||||| ||||| ||||||||||| ||||||||||||||||    
T  33618495 ccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagctgttggaaaaacgggattgcaaatgcca 33618396  T
Q  220 tcaccaagtgaggtcgatattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |  || ||||| |||| |||| |  |||| ||||||||||||    
T  33618395 tcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttct 33618301  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 147 - 314
Target Start/End: Complemental strand, 33627683 - 33627516
Alignment:
Q  147 aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt 246  Q
    ||||||||||||||||||||||| |  ||||||||||| |||| |||||| ||||| |||||||| |  ||||| ||||||||||||||||| |||||||    
T  33627683 aagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttt 33627584  T
Q  247 ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttct 314  Q
    | |||||||||||||||| |||||| |  |  |||||||||| || | ||||| ||||||||||||||    
T  33627583 tgaatatggttttaaagggctcttgttgcagtgattttgcaatttttgttgacctaataagttcttct 33627516  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 33588589 - 33588484
Alignment:
Q  135 cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtc 234  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| ||||||||| |||||||||||||    
T  33588589 cccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtc 33588490  T
Q  235 gatatt 240  Q
    ||||||    
T  33588489 gatatt 33588484  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 33595761 - 33595656
Alignment:
Q  135 cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtc 234  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| ||||||||| |||||||||||||    
T  33595761 cccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtc 33595662  T
Q  235 gatatt 240  Q
    ||||||    
T  33595661 gatatt 33595656  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 33602892 - 33602787
Alignment:
Q  135 cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtc 234  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||| ||||||||| |||||||||||||    
T  33602892 cccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtc 33602793  T
Q  235 gatatt 240  Q
    ||||||    
T  33602792 gatatt 33602787  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 33563069 - 33562979
Alignment:
Q  150 aggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatatt 240  Q
    |||||||||| |||||| || || ||||||||||| || |||||||| ||||  || || |||| ||| ||||||||||||||||||||||    
T  33563069 aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt 33562979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 313
Target Start/End: Complemental strand, 33622657 - 33622491
Alignment:
Q  147 aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt 246  Q
    ||||||||||||||||||||||| || |||||| |||| ||||  |||| |||| | | |||||| || ||||| |  |  |||||| |||| || ||||    
T  33622657 aagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctcttt 33622558  T
Q  247 ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttc 313  Q
    ||| ||||||||||||||  ||||  || || |||||| ||| || | ||||||||||| |||||||    
T  33622557 ttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttc 33622491  T

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