View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_13 (Length: 303)
Name: NF10580_low_13
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 28875288 - 28875573
Alignment:
| Q |
1 |
tgtagccccttttgaaggattacatgcatacatacctttgtgattggtagatggtgaagtacgtggtggcggcagcgggtgcacaggaagttcatagaac |
100 |
Q |
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| T |
28875288 |
tgtagccccttttgaaggattacatgcatacatacctttgtgattggtagatggtgaagtacgtggtggcggcagcgggtgcacaggaagttcatagaac |
28875387 |
T |
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| Q |
101 |
atatatttttcatatctaagaatacaacttggtccaataactctcccacctatcttattttcacaagatggaagattagctatagcttgaaccaaacatt |
200 |
Q |
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| T |
28875388 |
atatatttttcatatctaagaatacaacttggtccaataactctcccacctatcttattttcacaagatggaagattagctatagcttgaaccaaacatt |
28875487 |
T |
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| Q |
201 |
gattgcaatccaagtaacttatatcaggtgtacactgcattagactatatatatcttgaaaatttggacctgttaatagaaatata |
286 |
Q |
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| T |
28875488 |
gattgcaatccaagtaacttatatcaggtgtacactgcattagactatatatatcttgaaaatttggacctgttaatagaaatata |
28875573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 28861203 - 28861477
Alignment:
| Q |
12 |
ttgaaggattacatgcatacatacctttgtgattggtagatggtgaagtacgtggtggcggcagcgggtgcacaggaagttcatagaacatatatttttc |
111 |
Q |
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| T |
28861203 |
ttgaaggattgcatgcataattacctttgtgattggtagatggtgaagtaggtggtggcggcagcgggtgcacaggaagttcatagaacagatatctttc |
28861302 |
T |
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| Q |
112 |
atatctaagaatacaacttggtccaataactctcccacctatcttattttc---acaagatggaagattagctatagcttgaaccaaacattgattgcaa |
208 |
Q |
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| T |
28861303 |
atatctaagaatacaacttggtccaataactctcccacctatcttattttcacaacaagatggaagactagctatagcttgaaccaaacattgattgcaa |
28861402 |
T |
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| Q |
209 |
tccaagtaacttatatcaggtgtacactgcattagactatatatatcttgaaaatttggacctgttaatagaaat |
283 |
Q |
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| T |
28861403 |
tccaagtaacttacatcaggtgtacactgcataagactatatatatcttgaaaatttggacctgttaatagaaat |
28861477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 90 - 275
Target Start/End: Original strand, 28856123 - 28856311
Alignment:
| Q |
90 |
gttcatagaacatatatttttcatatctaagaatacaacttggtccaataactctcccacctatcttattttcacaa---gatggaagattagctatagc |
186 |
Q |
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| T |
28856123 |
gttcatagaacctataattttcatatctaagattacaacttggtctaatagctctcccacccaccttatttacacaacaagatggaagactagctatagc |
28856222 |
T |
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| Q |
187 |
ttgaaccaaacattgattgcaatccaagtaacttatatcaggtgtacactgcattagactatatatatcttgaaaatttggacctgtta |
275 |
Q |
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| T |
28856223 |
ttgatccaaacattgattgcaatccaaataacttaaatcaggtgtacactgcataagactatatatatcttgaaaatttggaccagtta |
28856311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 39 - 275
Target Start/End: Original strand, 28830864 - 28831100
Alignment:
| Q |
39 |
tgtgattggtagatggtgaagtacgtggtggcggcagcgggtgcacaggaagttcatagaacatatatttttcatatctaagaatacaacttggtccaat |
138 |
Q |
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| T |
28830864 |
tgtgattggtggatgctggagtgtgtggtggcggc---gggtgcacaggaagtgcatagaacagataactttcatatctaatattacaacttggtttcat |
28830960 |
T |
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| Q |
139 |
aactctcccacctatcttattttcaca---agatggaagattagctatagcttgaaccaaacattgattgcaatccaagtaacttatatcaggtgtacac |
235 |
Q |
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| T |
28830961 |
aactctagcaccaatcgaactttcaaattcagatggaagactatctatagcctgctccaaacattcattacattccaaagaactcatatcaggtgtacac |
28831060 |
T |
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| Q |
236 |
tgcattagactatatatatcttgaaaatttggacctgtta |
275 |
Q |
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| T |
28831061 |
tgcattagactatatatatcccgaaaatttgaacctgtta |
28831100 |
T |
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