View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_20 (Length: 262)
Name: NF10580_low_20
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 42688385 - 42688625
Alignment:
| Q |
17 |
cagtcaggagtttctgaagttatttattttgtggagaagaaattagaaaattcagatgttacatatactgcctctcacaagctactttcattggctggtg |
116 |
Q |
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| T |
42688385 |
cagtcaggagtttctgaagttatttattttgtggagaagaaattagaaaattcagatgttacatatactgcctctcacaagctactttcattggctggtg |
42688484 |
T |
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| Q |
117 |
taaaggtagcctcctatccatagttttctgtctgtgtatttcacttcattcagttggcttaggtataccaaattccgatattgattcaatactaataact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42688485 |
taaaggtagcctcctatccatagttttctgtctgtgtatttcacttcattcagttggcttaggtataccaaattccgatattgattcaatactaataact |
42688584 |
T |
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| Q |
217 |
tatcaatttacatgttccttatatttgtgtttcatctctct |
257 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
42688585 |
tatcaatttgcatgttccttatatttgtgtttcatgtctct |
42688625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 21185945 - 21186051
Alignment:
| Q |
17 |
cagtcaggagtttctgaagttatttattttgtggagaagaaattagaaaattcagatgttacatatactgcctctcacaagctactttcattggctggtg |
116 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21185945 |
cagtcaggagattctgaagtcatttattttgtggagaagaaattagaaaattcagatgttacatatactgcctctcacaagttactttcattggctggtg |
21186044 |
T |
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| Q |
117 |
taaaggt |
123 |
Q |
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||||||| |
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| T |
21186045 |
taaaggt |
21186051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 27119538 - 27119645
Alignment:
| Q |
17 |
cagtcaggagtttctgaagttatttattttgtggagaagaaatta-gaaaattcagatgttacatatactgcctctcacaagctactttcattggctggt |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27119538 |
cagtcaggagtttctgaagtcatttattttgtggagaagaaattaagaaaattcagatgttacatatactgcctctcacaagttactttcattggctggt |
27119637 |
T |
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| Q |
116 |
gtaaaggt |
123 |
Q |
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|||||||| |
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| T |
27119638 |
gtaaaggt |
27119645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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