View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_21 (Length: 253)
Name: NF10580_low_21
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 8042114 - 8041873
Alignment:
| Q |
12 |
gagatgaacacaatgtagatgcaccgggaaataagtaggttctgaattcagttctgcaactttggatccatatatcatccaatacttacaacaaagttca |
111 |
Q |
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| T |
8042114 |
gagatggacacaatgtagatgcaccgggaaataagtaggttctgaattcaattctgcaactctggacccacatatcatccaatacttacaacaaagttca |
8042015 |
T |
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| Q |
112 |
gattagtccatgcatgggatgagtagttctggagatccttttcaaatgagaaaattttccgatgcttcacaacatggagacttggagggacttaggaaag |
211 |
Q |
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| T |
8042014 |
gattagtccatgcatgggatgagtagttctggagatccttttcaaatgagaaatttttccgatgcttcacaacatggagacttggagggacttcggaaag |
8041915 |
T |
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| Q |
212 |
catatcttcagaccttttagtcaacaaaagcaacaatacgaa |
253 |
Q |
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| T |
8041914 |
catatcttcagactttttagtcaacaaaagcaacaatacgaa |
8041873 |
T |
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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 42526964 - 42527201
Alignment:
| Q |
12 |
gagatgaacacaatgtagatgcaccgggaaat-aagtaggttctgaattcagttctgcaactttggatccatatatcatccaatacttacaacaaagttc |
110 |
Q |
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|||||| ||||||| ||||||||| ||||||| ||||| ||||||| |||| |||||||||| |||| ||| ||||||||||| ||| || |||||||| |
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| T |
42526964 |
gagatggacacaatatagatgcactgggaaatcaagtacgttctgacttcaattctgcaactctggacccacgtatcatccaatgcttgcagcaaagttc |
42527063 |
T |
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| Q |
111 |
agattagtccatgcatgggatgagtagttctggagatccttttcaaatgagaaaattttccgatgcttcacaacatggagacttggagggacttaggaaa |
210 |
Q |
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| T |
42527064 |
ggagtactccatgcatgggatgagcagttctcgagatccttttcaaatgagaaatttttctgatgcttcacaacatggagacttagagggacttcagaaa |
42527163 |
T |
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| Q |
211 |
gcatatcttcagac-ctt-ttagtcaacaaaagcaaca |
246 |
Q |
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| T |
42527164 |
gcatatctcgagactcttcttagtcaacaaaagcaaca |
42527201 |
T |
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