View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_22 (Length: 252)
Name: NF10580_low_22
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 7481575 - 7481798
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7481575 |
gatcttgacaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatcaagttcaactctggc |
7481674 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
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| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
7481675 |
tggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaacactgaagacttgaggcgacaagtcatgaccagtaacaagaaggc |
7481774 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
7481775 |
taaaaagttttacatcttcttctc |
7481798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 7722837 - 7722614
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
| |
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|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7722837 |
gatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatcaagttcaactctggc |
7722738 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722737 |
ttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
7722638 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
|||||||||| |||||||||||| |
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|
| T |
7722637 |
taaaaagttttgcatcttcttctc |
7722614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 7129563 - 7129340
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7129563 |
gatcttcaaaagctggtggaaaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggt |
7129464 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
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| ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
7129463 |
tggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccaatcacaagaaggc |
7129364 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
||||||| ||| |||||||||||| |
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|
| T |
7129363 |
taaaaaggttcgcatcttcttctc |
7129340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 7493977 - 7494200
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |
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|
| T |
7493977 |
gatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcaaggaaccaacaaccatcaagttcaactgtggt |
7494076 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
| |
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| ||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
7494077 |
tggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcgacaggtgatgaccagtaacaagaaggc |
7494176 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7494177 |
taaaaagtttcacatcttcttctc |
7494200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 7519644 - 7519867
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |
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|
| T |
7519644 |
gatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcaaggaaccaacaaccatcaagttcaactgtggt |
7519743 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
| |
|
| ||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7519744 |
tggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagtgatgacctgtaacaagaaggc |
7519843 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
7519844 |
taaaaagtttcacatcttcttctc |
7519867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 7527694 - 7527917
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
7527694 |
gatcttgacaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaagagcagcagggcaccaacaaccatcaagttcaactatggc |
7527793 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
| |
|
| |||||||||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||| | ||||||| || |
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|
| T |
7527794 |
tggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcgacaagtgatgaccaatcacaagaaagc |
7527893 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
||||||| | | |||||||||||| |
|
|
| T |
7527894 |
taaaaaggtccgcatcttcttctc |
7527917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 7714543 - 7714327
Alignment:
| Q |
22 |
gatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatcaagttcaactctggc |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
7714543 |
gatcttgacaagatggtggataatatgtatgagatcaaggctgtgattttggat-------agcagcagggagccaacaaccatgaagttcaactatggc |
7714451 |
T |
|
| Q |
122 |
ttgaaaatctcaaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggc |
221 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| |||||||| ||| || |||||||||| |||||| ||||| ||||||||||||||| | ||||||| || |
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|
| T |
7714450 |
tggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaagacctgaggtgacaagtgatgaccaatcacaagaaagc |
7714351 |
T |
|
| Q |
222 |
taaaaagtttcacatcttcttctc |
245 |
Q |
| |
|
||||||| || |||||||||||| |
|
|
| T |
7714350 |
taaaaaggtttgcatcttcttctc |
7714327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 7506351 - 7506464
Alignment:
| Q |
132 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7506351 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
7506450 |
T |
|
| Q |
232 |
cacatcttcttctc |
245 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7506451 |
cacatcttcttctc |
7506464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 7506281 - 7506352
Alignment:
| Q |
18 |
agaagatcttgacaagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagca |
89 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7506281 |
agaagatcttgactagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagca |
7506352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 16750836 - 16750712
Alignment:
| Q |
49 |
tctgagatcaaggctgtggttttggatgcagaggagca---gcagggagccaacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttg |
145 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || |||||| |||||||| || | || |||| ||| | || || ||||||||| |||||| |
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|
| T |
16750836 |
tctgagatcaaggctgcggttttggatgcagaagaacaacagcagggccccaacaactatagaattaaactatgggtggagaagctcaaagatactcttg |
16750737 |
T |
|
| Q |
146 |
atgatgctgatgacttgctcgatga |
170 |
Q |
| |
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||||||||||||||||||| ||||| |
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|
| T |
16750736 |
atgatgctgatgacttgcttgatga |
16750712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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