View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10580_low_24 (Length: 250)

Name: NF10580_low_24
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10580_low_24
NF10580_low_24
[»] chr4 (21 HSPs)
chr4 (55-180)||(41810163-41810303)
chr4 (175-242)||(41810345-41810412)
chr4 (52-130)||(32651257-32651335)
chr4 (53-118)||(38467710-38467775)
chr4 (65-116)||(3649873-3649924)
chr4 (131-169)||(14209422-14209460)
chr4 (131-169)||(14210373-14210411)
chr4 (131-169)||(14211342-14211380)
chr4 (131-169)||(14212293-14212331)
chr4 (131-169)||(14213262-14213300)
chr4 (131-169)||(14214230-14214268)
chr4 (131-169)||(14215199-14215237)
chr4 (131-169)||(14216168-14216206)
chr4 (131-169)||(14217119-14217157)
chr4 (131-169)||(14218070-14218108)
chr4 (131-169)||(14219040-14219078)
chr4 (131-169)||(14220009-14220047)
chr4 (131-169)||(14220960-14220998)
chr4 (131-169)||(14221929-14221967)
chr4 (131-169)||(14222898-14222936)
chr4 (64-97)||(26720238-26720271)
[»] chr3 (9 HSPs)
chr3 (57-180)||(52130783-52130921)
chr3 (53-100)||(11394008-11394055)
chr3 (187-242)||(52130955-52131010)
chr3 (58-117)||(19766009-19766068)
chr3 (131-171)||(12812858-12812898)
chr3 (64-100)||(46233980-46234016)
chr3 (132-180)||(53689322-53689370)
chr3 (132-171)||(52311606-52311645)
chr3 (135-171)||(14459220-14459256)
[»] chr1 (10 HSPs)
chr1 (175-242)||(31770903-31770970)
chr1 (175-242)||(7607915-7607982)
chr1 (52-130)||(17726022-17726099)
chr1 (64-130)||(22368186-22368252)
chr1 (70-130)||(14184692-14184752)
chr1 (64-100)||(32440666-32440702)
chr1 (64-97)||(31771394-31771427)
chr1 (64-100)||(1721557-1721593)
chr1 (131-167)||(40981550-40981586)
chr1 (131-171)||(50290513-50290553)
[»] chr6 (2 HSPs)
chr6 (53-118)||(31444761-31444826)
chr6 (57-116)||(33054164-33054223)
[»] chr8 (3 HSPs)
chr8 (64-128)||(44663672-44663736)
chr8 (64-118)||(35348992-35349046)
chr8 (80-121)||(19962047-19962088)
[»] chr7 (5 HSPs)
chr7 (4-56)||(10220193-10220245)
chr7 (76-130)||(7841300-7841354)
chr7 (64-118)||(21820173-21820227)
chr7 (131-171)||(1971172-1971212)
chr7 (58-100)||(16262699-16262741)
[»] chr2 (6 HSPs)
chr2 (64-128)||(4453779-4453843)
chr2 (58-100)||(7161811-7161853)
chr2 (53-100)||(997810-997857)
chr2 (131-169)||(31409658-31409696)
chr2 (64-100)||(9208571-9208607)
chr2 (64-100)||(3625182-3625218)
[»] scaffold0014 (1 HSPs)
scaffold0014 (56-97)||(32608-32649)
[»] scaffold0152 (1 HSPs)
scaffold0152 (64-118)||(10196-10250)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-118)||(37007-37061)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 41810163 - 41810303
Alignment:
Q  55 ctaatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta---------------agaccgtta 139  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||               |||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaattttaagatttttaagcgccaatcaatccagaccgtta 41810262  T
Q  140 gatcattgtaagtaggggaggttagcacatcaaccactgat 180  Q
    |||||||||||||||||| |||||||| |||||||| ||||    
T  41810263 gatcattgtaagtaggggcggttagcatatcaaccattgat 41810303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 41810345 - 41810412
Alignment:
Q  175 actgatgttattatcacacctctccattgttgttcaatacccatgcaaactctacagtgccctatgct 242  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  41810345 actgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgct 41810412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 32651335 - 32651257
Alignment:
Q  52 catctaatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta 130  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||    
T  32651335 catctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagattttta 32651257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 38467775 - 38467710
Alignment:
Q  53 atctaatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaatt 118  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaatt 38467710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 3649873 - 3649924
Alignment:
Q  65 ctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaa 116  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaa 3649924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14209460 - 14209422
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14209460 agaccgttagatcattgtaattaggggaggttagcacat 14209422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14210411 - 14210373
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14210411 agaccgttagatcattgtaattaggggaggttagcacat 14210373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14211380 - 14211342
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14211380 agaccgttagatcattgtaattaggggaggttagcacat 14211342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14212331 - 14212293
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14212331 agaccgttagatcattgtaattaggggaggttagcacat 14212293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14213300 - 14213262
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14213300 agaccgttagatcattgtaattaggggaggttagcacat 14213262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14214268 - 14214230
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14214268 agaccgttagatcattgtaattaggggaggttagcacat 14214230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14215237 - 14215199
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14215237 agaccgttagatcattgtaattaggggaggttagcacat 14215199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14216206 - 14216168
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14216206 agaccgttagatcattgtaattaggggaggttagcacat 14216168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14217157 - 14217119
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14217157 agaccgttagatcattgtaattaggggaggttagcacat 14217119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14218108 - 14218070
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14218108 agaccgttagatcattgtaattaggggaggttagcacat 14218070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14219078 - 14219040
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14219078 agaccgttagatcattgtaattaggggaggttagcacat 14219040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14220047 - 14220009
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14220047 agaccgttagatcattgtaattaggggaggttagcacat 14220009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14220998 - 14220960
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  14220998 agaccgttagatcattgtaattaggggaggttagcacat 14220960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14221967 - 14221929
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  14221967 agaccgttagatcattttaattaggggaggttagcacat 14221929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 14222936 - 14222898
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  14222936 agaccattagatcattgtaattaggggaggttagcacat 14222898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 26720238 - 26720271
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaa 97  Q
    ||||||||||| ||||||||||||||||||||||    
T  26720238 tctaacttattcctaatcctagttaacactccaa 26720271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 52130783 - 52130921
Alignment:
Q  57 aatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta---------------agaccgttaga 141  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||               |||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattctaagatttttaggcgccaatcaatccagaccgttaga 52130882  T
Q  142 tcattgtaagtaggggaggttagcacatcaaccactgat 180  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  52130883 tcattgtaagtaggggaggttagcacatcaaccattgat 52130921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 11394008 - 11394055
Alignment:
Q  53 atctaatctactctaacttatttctaatcctagttaacactccaatta 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  11394008 atctaatctaatctaacttatttctaatcctagttaacactccaatta 11394055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 52130955 - 52131010
Alignment:
Q  187 atcacacctctccattgttgttcaatacccatgcaaactctacagtgccctatgct 242  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  52130955 atcacacctctccattattgttcaataccgatgcaaactctacagtgccccatgct 52131010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 19766009 - 19766068
Alignment:
Q  58 atctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaat 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |  ||||||||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaat 19766068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 12812898 - 12812858
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacatca 171  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12812898 agaccgttagatcattgtaattaggggaggttagcacatca 12812858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 46234016 - 46233980
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||||||||| |||||||||||||||||||||||||    
T  46234016 tctaacttattcctaatcctagttaacactccaatta 46233980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 53689322 - 53689370
Alignment:
Q  132 gaccgttagatcattgtaagtaggggaggttagcacatcaaccactgat 180  Q
    ||||||||||||||||||| || ||||||||||||||||| ||| ||||    
T  53689322 gaccgttagatcattgtaattaagggaggttagcacatcagccattgat 53689370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 52311645 - 52311606
Alignment:
Q  132 gaccgttagatcattgtaagtaggggaggttagcacatca 171  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  52311645 gaccgttagatgattgtaattaggggaggttagcacatca 52311606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 14459256 - 14459220
Alignment:
Q  135 cgttagatcattgtaagtaggggaggttagcacatca 171  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  14459256 cgttagatcattataactaggggaggttagcacatca 14459220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 31770970 - 31770903
Alignment:
Q  175 actgatgttattatcacacctctccattgttgttcaatacccatgcaaactctacagtgccctatgct 242  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  31770970 actgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgct 31770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 7607982 - 7607915
Alignment:
Q  175 actgatgttattatcacacctctccattgttgttcaatacccatgcaaactctacagtgccctatgct 242  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  7607982 actgctgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgct 7607915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 17726022 - 17726099
Alignment:
Q  52 catctaatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta 130  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||    
T  17726022 catctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagattttta 17726099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 22368252 - 22368186
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta 130  Q
    ||||||||||| |||||||||||||||||| |||||| || |||||||||||||| |||||||||||    
T  22368252 tctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattctaagattttta 22368186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 14184692 - 14184752
Alignment:
Q  70 ttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta 130  Q
    |||||||||||  |||||||||||| |||||||| ||||||| |||||| |||||||||||    
T  14184692 ttatttctaattatagttaacactctaattaccacttaaaactctaattctaagattttta 14184752  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 32440702 - 32440666
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32440702 tctaacttattcctaatcctagttaacactccaatta 32440666  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 31771427 - 31771394
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaa 97  Q
    ||||||||||| ||||||||||||||||||||||    
T  31771427 tctaacttattcctaatcctagttaacactccaa 31771394  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1721557 - 1721593
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  1721557 tctaacttattcctaatcctaattaacactccaatta 1721593  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 40981586 - 40981550
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcac 167  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  40981586 agaccgttagatcattgtaattagaggaggttagcac 40981550  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 50290513 - 50290553
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacatca 171  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  50290513 agaccgttagatcattataattagaggaggttagcacatca 50290553  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 31444761 - 31444826
Alignment:
Q  53 atctaatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaatt 118  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||    
T  31444761 atctaatctaatctaacttattcctaatcctagttaacactccaattactacttaaaaccctaatt 31444826  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 33054223 - 33054164
Alignment:
Q  57 aatctactctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaa 116  Q
    |||||| ||||||||||| ||||||||| |||||||| |||||| || ||||||||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacacttaaaaccctaa 33054164  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 44663736 - 44663672
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagatttt 128  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  44663736 tctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgatttt 44663672  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 35348992 - 35349046
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaatt 118  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  35348992 tctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaatt 35349046  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 19962047 - 19962088
Alignment:
Q  80 tcctagttaacactccaattaccatttaaaaccctaatttta 121  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  19962047 tcctagttaacactcaaattaacacttaaaaccctaatttta 19962088  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 10220193 - 10220245
Alignment:
Q  4 ataataaaaattcttttactaacttttggaatttagagaatacaaatccatct 56  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10220193 ataaaaaaaattcttttactaacttttggaatttagagaatacaaatccatct 10220245  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 7841300 - 7841354
Alignment:
Q  76 ctaatcctagttaacactccaattaccatttaaaaccctaattttaagattttta 130  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  7841300 ctaatcctagttaacactctaattaccacttaaaaccctaattctaagattttta 7841354  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 21820227 - 21820173
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaatt 118  Q
    ||||||||||| ||||||||| ||||||||||||||| || |||||||| |||||    
T  21820227 tctaacttattcctaatcctaattaacactccaattaacacttaaaaccataatt 21820173  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 1971172 - 1971212
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacatca 171  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  1971172 agaccgttagatcattataattaggggaggttagcacatca 1971212  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 16262741 - 16262699
Alignment:
Q  58 atctactctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaatta 16262699  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 4453779 - 4453843
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaattttaagatttt 128  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  4453779 tctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgatttt 4453843  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 7161811 - 7161853
Alignment:
Q  58 atctactctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaatta 7161853  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 997810 - 997857
Alignment:
Q  53 atctaatctactctaacttatttctaatcctagttaacactccaatta 100  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  997810 atctaatctaatctaacttattcctaatcctagttaacacttcaatta 997857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 31409696 - 31409658
Alignment:
Q  131 agaccgttagatcattgtaagtaggggaggttagcacat 169  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  31409696 agaccgttagatcattgtaattaggggaggttagcacat 31409658  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 9208571 - 9208607
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9208571 tctaacttattcctaatcctagttaacactccaatta 9208607  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 3625182 - 3625218
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaatta 100  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  3625182 tctaacttattcctaatcctaattaacactccaatta 3625218  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 32608 - 32649
Alignment:
Q  56 taatctactctaacttatttctaatcctagttaacactccaa 97  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaa 32649  T

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Target: scaffold0152 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 10196 - 10250
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaatt 118  Q
    ||||||||||| | ||||||||||||||||||||||| || |  |||||||||||    
T  10196 tctaacttattcccaatcctagttaacactccaattaacactccaaaccctaatt 10250  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 37061 - 37007
Alignment:
Q  64 tctaacttatttctaatcctagttaacactccaattaccatttaaaaccctaatt 118  Q
    ||||||||||| ||||||||| ||||||||||||||| || || ||| |||||||    
T  37061 tctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaatt 37007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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