View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_27 (Length: 245)
Name: NF10580_low_27
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 7450543 - 7450401
Alignment:
| Q |
83 |
gattttcccatttcgaggccaaccttcaaggnnnnnnnttatcacgttcatattcaagaagtgtaactcgacctgagagagcctacctcacactcgatgt |
182 |
Q |
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| T |
7450543 |
gattttcccatttcgaggccaaccttcaaggaaaaaaattatcacgttgatattcaagaagtgtaactcaacctgagagagcctacctcacactcgatgt |
7450444 |
T |
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| Q |
183 |
cggaatcttctccacctccccgatgtctttccttacaacctca |
225 |
Q |
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| T |
7450443 |
cggaatctgctccacctccccaatgtctttccttacaacctca |
7450401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 7458685 - 7458543
Alignment:
| Q |
83 |
gattttcccatttcgaggccaaccttcaaggnnnnnnnttatcacgttcatattcaagaagtgtaactcgacctgagagagcctacctcacactcgatgt |
182 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7458685 |
gattttcccatttcgaggccaaccttcaaggaaaaaaattatcacgttgatattcaagaagtgtaactcaacctgagagagcctacctcacactcgatgt |
7458586 |
T |
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| Q |
183 |
cggaatcttctccacctccccgatgtctttccttacaacctca |
225 |
Q |
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| T |
7458585 |
cggaatctgctccacctccccaatgtctttccttacaacctca |
7458543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7459185 - 7459098
Alignment:
| Q |
1 |
ccatcaagaaatattccaaaaggattcgccacctaccttgtccattgcatcctcgagctctgccttctcggatggcaaagaggatttt |
88 |
Q |
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| T |
7459185 |
ccatcaagaaatattccaaaaggattcgccacctaccttgtccattgcatcctcgagctctgccttctcggatggcaaagaggatttt |
7459098 |
T |
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