View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_29 (Length: 242)
Name: NF10580_low_29
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 10220035 - 10220199
Alignment:
| Q |
75 |
catggtgtaggtaaatagatatatgaacttcattactctacatttagacgacataatttgtccaaaaatgtatttttagatgacnnnnnnnttgtatttt |
174 |
Q |
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| T |
10220035 |
catggtgtaggtaagtagatatatgaacttcattactctacattcagacgacataatttgtccaaaaatgtgtttttagatgacaaaaaaattgtatttt |
10220134 |
T |
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| Q |
175 |
ttagatttgtattttgggtgggaaaaattcctcctttaatgtaatcactatcactataataaaaa |
239 |
Q |
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| T |
10220135 |
ttagatgtgtattttgggtggaaaaaattcctcttttaatgtaatcactatcactataataaaaa |
10220199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 10219913 - 10219971
Alignment:
| Q |
18 |
catgtgatattgttgtgttggtacaatttactcacgctcgtgtgtatttttgcgtacca |
76 |
Q |
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| T |
10219913 |
catgtgatattgttgtgttggtacaatatactcacgctcgtgtgtatttttgtgtacca |
10219971 |
T |
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