View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_3 (Length: 447)
Name: NF10580_low_3
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 156 - 431
Target Start/End: Original strand, 35747749 - 35748024
Alignment:
| Q |
156 |
aaccataatcatcatcattatcatttcataaacttaaatattttctttctttctcttcggtattttcacaaacaggtagaagaaaagatgatcagtgaaa |
255 |
Q |
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| T |
35747749 |
aaccataatcatcatcattatcatttcataaacttaaatattttctttctttctattcggtattttcacaaacaggtagaagaaaagatgatcagtgaaa |
35747848 |
T |
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| Q |
256 |
attccaattcaaatggtggtgatgaaaacggtgataaagtgaagggttcatggagtaaaactgaagatgaaacgttggtgaaactggtaaaggaaaacgg |
355 |
Q |
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| T |
35747849 |
attccaattcaaatggtggtgacgaaaacggtgataaagtgaagggttcatggagtaaaactgaagatgaaacgttggtgaaactggtaaaggaaaacgg |
35747948 |
T |
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| Q |
356 |
tgcaagaaactggtcggtgataagcaacgaaatccccggtcgttcaggaaaatcatgccgtctacggtggtgtaat |
431 |
Q |
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| T |
35747949 |
tgcaagaaactggtcggtgataagcaacgaaatccccggtcgttcaggaaaatcatgccgtctacggtggtgtaat |
35748024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 35747604 - 35747687
Alignment:
| Q |
11 |
cagagacaaacacgttggaagtagttacatacacacacaacaaaaacagtttttacttttaaggtttataattacttaattcca |
94 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35747604 |
cagaaacaaacacgttggaagtagttacatacacacacaacaaaaacagtttttacttttaaggtttataattacttaattcca |
35747687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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