View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10580_low_31 (Length: 241)

Name: NF10580_low_31
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10580_low_31
NF10580_low_31
[»] chr7 (4 HSPs)
chr7 (24-241)||(9121782-9122003)
chr7 (82-185)||(5219877-5219980)
chr7 (55-172)||(6035055-6035173)
chr7 (51-109)||(10081233-10081292)
[»] chr3 (3 HSPs)
chr3 (28-240)||(7808696-7808911)
chr3 (199-237)||(29953300-29953338)
chr3 (199-237)||(30002454-30002492)
[»] chr1 (3 HSPs)
chr1 (35-240)||(12759682-12759888)
chr1 (24-173)||(22058338-22058488)
chr1 (160-240)||(22058253-22058333)
[»] chr2 (2 HSPs)
chr2 (24-240)||(12545386-12545593)
chr2 (51-238)||(27885908-27886095)
[»] chr5 (1 HSPs)
chr5 (27-240)||(18601002-18601214)
[»] chr4 (2 HSPs)
chr4 (51-142)||(13956467-13956559)
chr4 (79-181)||(2488030-2488132)
[»] chr8 (2 HSPs)
chr8 (87-152)||(14728761-14728826)
chr8 (55-150)||(30869412-30869508)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 9121782 - 9122003
Alignment:
Q  24 agttgatctccctgaataaatgctcagtgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactct 122  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  9121782 agttgatatccctttataaatgctcgatgaatcattgctccagacccaaaaatctacaccttcagagaaggtcaaactctctaaagcctggagcaactct 9121881  T
Q  123 cccaaaaccacaagtt----cccactaaaaaagacccctcttccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcacttta 218  Q
    | ||||||||||||||    || ||||||||||| ||||| || |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  9121882 cgcaaaaccacaagttagttccgactaaaaaagatccctcctc-acttcagatcccagacccattcaaatccgtctctcacagtcatatcaatcacttta 9121980  T
Q  219 gcttctttttgtatagaaacttt 241  Q
    |||||||||||||||||||||||    
T  9121981 gcttctttttgtatagaaacttt 9122003  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 5219980 - 5219877
Alignment:
Q  82 cttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttcccactaaaaaagacccctcttccacttaagatcccagaccca 181  Q
    ||||| |||||||||||||||||||| | ||||| | ||||||||||| || ||||||||||| ||||| | |||| |||| |||||||||| |||||||    
T  5219980 cttcaaagaaggtcagactctctaaatcctggagaagctctcccaaaatcaaaagttcccacttaaaaatatcccttttcctcttaagatcctagaccca 5219881  T
Q  182 ttca 185  Q
    ||||    
T  5219880 ttca 5219877  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 6035173 - 6035055
Alignment:
Q  55 tcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttcccactaaaaaagac 153  Q
    ||||| ||||| |||||||| || ||||||||||||||| ||||||||| |||||  |||| |||||||||||||| ||| |  ||||||| ||||||      
T  6035173 tcattactccaaacccaaaattctacaccttcagagaagatcagactctttaaagtctggaataactctcccaaaatcactatctcccactcaaaaagtt 6035074  T
Q  154 ccctcttccacttaagatc 172  Q
     | || |||||||||||||    
T  6035073 acgtcctccacttaagatc 6035055  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 10081292 - 10081233
Alignment:
Q  51 tgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagc 109  Q
    ||||||||| ||||||||||||||||| | ||||| |||||||| | |||||||||||||    
T  10081292 tgaatcattactccagacccaaaaatcaagaccttaagagaaggccggactctctaaagc 10081233  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 7808696 - 7808911
Alignment:
Q  28 gatctccctgaataaatgctcagtgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactctccca 126  Q
    |||||| ||||||||||| |   |||||||||||||||||| ||||| || |||| || ||||||| || | ||||||||||  ||||| | |||| |||    
T  7808696 gatctcactgaataaatgtttgatgaatcattgctccagactcaaaagtctacacatttagagaagatcgggctctctaaagtctggagcacctcttcca 7808795  T
Q  127 aaaccacaagttc-----ccactaaaaaagacccctcttccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcactttagct 221  Q
    ||| |||||||||     ||||| ||||||| | |||   ||||||||||||||||| || ||| ||   ||||||||||||||||||||||||||||||    
T  7808796 aaatcacaagttcaattcccactcaaaaagatctctc---cacttaagatcccagacacaatcagatctttctctcacagtcatatcaatcactttagct 7808892  T
Q  222 tctttttgtatagaaactt 240  Q
    |||||||||||||||||||    
T  7808893 tctttttgtatagaaactt 7808911  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 29953300 - 29953338
Alignment:
Q  199 cagtcatatcaatcactttagcttctttttgtatagaaa 237  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  29953300 cagtcatatcaatcactttagcttctttttagatagaaa 29953338  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 30002454 - 30002492
Alignment:
Q  199 cagtcatatcaatcactttagcttctttttgtatagaaa 237  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  30002454 cagtcatatcaatcactttagcttctttttagatagaaa 30002492  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 12759888 - 12759682
Alignment:
Q  35 ctgaataaatgctcagtgaatcattgctccagacccaaaaatca-caccttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccac 133  Q
    ||||||||||||||  ||||||||||||||| ||||| || |   |||  ||||| ||| |  | ||||||||| | | ||| ||||||||||||| |||    
T  12759888 ctgaataaatgctcgatgaatcattgctccaaacccagaagtatgcactctcagaaaagattggtctctctaaatccttgagcaactctcccaaaatcac 12759789  T
Q  134 aagttcccactaaaaaagacccctcttccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcactttagcttctttttgtata 233  Q
    |||||| |||| ||||||| ||||||||||||||||||| || ||||||| | ||   |||||||||| ||||||||| || ||||||||||| || |||    
T  12759788 aagttctcactcaaaaagatccctcttccacttaagatctcatacccatttagatccctctctcacagacatatcaataacattagcttctttctgaata 12759689  T
Q  234 gaaactt 240  Q
    |||||||    
T  12759688 gaaactt 12759682  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 22058488 - 22058338
Alignment:
Q  24 agttgatctccctgaataaatgctcagtgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactct 122  Q
    ||||||| || ||||||||||||||  ||||||||| ||||| |||||||| || |||||||| ||||||||    ||||||||||| | ||| ||||||    
T  22058488 agttgatttcactgaataaatgctctatgaatcatttctccaaacccaaaagtctacaccttcggagaaggttgatctctctaaagcctagagcaactct 22058389  T
Q  123 cccaaaaccacaagttcccactaaaaaagacccctcttccacttaagatcc 173  Q
    | ||||| |||||||||||||| |||||||  |||| |  |||||||||||    
T  22058388 ctcaaaatcacaagttcccactcaaaaagattcctcctgtacttaagatcc 22058338  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 22058333 - 22058253
Alignment:
Q  160 tccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcactttagcttctttttgtatagaaactt 240  Q
    |||||||||||||  ||||||||| | ||   |||||||  |||||||||||| ||||| |||||||||| ||||||||||    
T  22058333 tccacttaagatcagagacccattgagatctctctctcatggtcatatcaatctctttaccttctttttgaatagaaactt 22058253  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 12545386 - 12545593
Alignment:
Q  24 agttgatctccctgaataaatgctcagtgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactct 122  Q
    ||||||||||  |||||||||||||    ||||||||||||| ||||||||||| ||   |||  ||||| ||||||||||||| || ||||| | ||||    
T  12545386 agttgatctcattgaataaatgctcgacaaatcattgctccaaacccaaaaatctacgatttcgaagaagatcagactctctaaggcttggagcagctct 12545485  T
Q  123 cccaaaaccacaagttcccactaaaaaagacccctcttccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcactttagctt 222  Q
    || |||| |||||||||||||| ||||| | || || ||||| ||||||| || || |||          |||||||||||||||||||||||||||| |    
T  12545486 cctaaaatcacaagttcccactcaaaaatatccttcctccacataagatctcaaactcat----------ctctcacagtcatatcaatcactttagcat 12545575  T
Q  223 ctttttgtatagaaactt 240  Q
    ||||||||||| ||||||    
T  12545576 ctttttgtataaaaactt 12545593  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 27885908 - 27886095
Alignment:
Q  51 tgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttcccactaaaaa 149  Q
    |||||| |||||||||| |||||| || ||| ||| ||||||||| |  || |||||||| | ||||||||||||||||| |||||| |||||   ||||    
T  27885908 tgaatcgttgctccagatccaaaattctacatctttagagaaggttatcctttctaaagc-tagagtaactctcccaaaatcacaagctcccagataaaa 27886006  T
Q  150 agacccctcttccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcactttagcttctttttgtatagaaac 238  Q
    ||| | ||  ||||||||||||| || |||||  |||||   | ||||| |||||||| |||  ||||||||||||| || ||||||||    
T  27886007 agatctcttctccacttaagatcacacacccacccaaatccctatctcatagtcatataaatatctttagcttctttatgaatagaaac 27886095  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 18601214 - 18601002
Alignment:
Q  27 tgatctccctgaataaatgctcagtgaatcattgctccagacccaaaaatca-caccttcagagaaggtcagactctctaaagcatggagtaactctccc 125  Q
    ||||||| ||||||||||| ||  ||||||||||  ||| | |||||| |   |||||||||||| ||||||||||| |||||| ||||| | |||||||    
T  18601214 tgatctcactgaataaatgttcgatgaatcattgtcccaaatccaaaagtatgcaccttcagagagggtcagactctttaaagcctggagcagctctccc 18601115  T
Q  126 aaaaccacaagttcccactaaaaaagacccctcttccacttaagatcccagacccattcaaattggtctctcacagtcatatcaatcactttagcttctt 225  Q
    ||||   ||| ||||||||  |||||| | ||| |||||||||||||||| ||| ||| | ||   ||| | || |||||||||| ||||||||||||||    
T  18601114 aaaa--tcaaattcccactcgaaaagatcactcctccacttaagatcccaaacctatttagatccctctataacggtcatatcaaacactttagcttctt 18601017  T
Q  226 tttgtatagaaactt 240  Q
    | || ||||||||||    
T  18601016 tctgaatagaaactt 18601002  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 13956559 - 13956467
Alignment:
Q  51 tgaatcattgctccagacccaaaaatc-acaccttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttccca 142  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||  ||| | | |||| |||||| || |||||||||    
T  13956559 tgaatcattgctccagacccaaaaatctacaccttcaaagaaggtcggaatctctaaagtttggtgcagctcttccaaaatcataagttccca 13956467  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 2488132 - 2488030
Alignment:
Q  79 caccttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttcccactaaaaaagacccctcttccacttaagatcccagac 178  Q
    |||||||| ||||  |||||||||||||||| || || | || ||||||||  | || |||||||||||||| | ||||  |||||||||||||||| ||    
T  2488132 caccttcaaagaatttcagactctctaaagcctgtagcagctgtcccaaaataaaaaattcccactaaaaaatatcccttctccacttaagatcccatac 2488033  T
Q  179 cca 181  Q
    |||    
T  2488032 cca 2488030  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 14728761 - 14728826
Alignment:
Q  87 gagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttcccactaaaaaaga 152  Q
    |||||| |||||||||||||| ||||||| | | ||||||||| ||||||| ||||||||||||||    
T  14728761 gagaagatcagactctctaaaacatggagcagccctcccaaaatcacaagtacccactaaaaaaga 14728826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 30869508 - 30869412
Alignment:
Q  55 tcattgctccagacccaaaaatca-caccttcagagaaggtcagactctctaaagcatggagtaactctcccaaaaccacaagttcccactaaaaaa 150  Q
    ||||||| |||||||||||| ||  |||||||| | ||||| | |||||||||||| ||||| | ||||||||||| || ||||||||||| |||||    
T  30869508 tcattgccccagacccaaaagtctgcaccttcataaaaggtaaaactctctaaagcctggagcagctctcccaaaatcaaaagttcccactcaaaaa 30869412  T

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