View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_35 (Length: 239)
Name: NF10580_low_35
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 12344772 - 12344556
Alignment:
| Q |
7 |
aagttttacacccttttttcttctaataattgtcttgttgaattttcatgttaaagaaaattaaaacaagggtgtaattaagctagaataaaaaaggaga |
106 |
Q |
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| T |
12344772 |
aagttttacacccttttttcttctaataattgtcttgttgaattttcatgttaaagaaaattaaaacaagggtgtaattaagctagaataaaaaaggaga |
12344673 |
T |
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| Q |
107 |
ttaaggaaaattaaccaaaaagaaatatattcttaagaaagtggaaattgaagatgaagcatactttcatggccacctaagagttcaacagcatgaacaa |
206 |
Q |
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| T |
12344672 |
ttaaggaaaattaaccaaaaagaaatatattcttaagaaagtggaaattgaagatgaagcatactttcatggccacctaagagttcaacagcatgaacaa |
12344573 |
T |
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| Q |
207 |
atcgagcatgaagtgta |
223 |
Q |
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| T |
12344572 |
atcgagcatgaagtgta |
12344556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 27568724 - 27568763
Alignment:
| Q |
168 |
tactttcatggccacctaagagttcaacagcatgaacaaa |
207 |
Q |
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| T |
27568724 |
tactttcatggccacctaaaagttcaacagcatgaacaaa |
27568763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 29258843 - 29258792
Alignment:
| Q |
168 |
tactttcatggccacctaagagttcaacagcatgaacaaatcgagcatgaag |
219 |
Q |
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| T |
29258843 |
tactttcatggccaccaagaagctcaacagcatgaacaaatctagcatgaag |
29258792 |
T |
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