View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10580_low_37 (Length: 237)

Name: NF10580_low_37
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10580_low_37
NF10580_low_37
[»] chr2 (2 HSPs)
chr2 (16-220)||(29661760-29661977)
chr2 (123-162)||(28428327-28428366)
[»] chr7 (4 HSPs)
chr7 (113-161)||(34015914-34015962)
chr7 (113-193)||(22311081-22311161)
chr7 (113-161)||(38163122-38163170)
chr7 (113-162)||(34880594-34880644)
[»] chr8 (2 HSPs)
chr8 (111-162)||(23398067-23398118)
chr8 (110-162)||(23398149-23398201)
[»] chr6 (2 HSPs)
chr6 (114-162)||(18072811-18072859)
chr6 (115-157)||(8849934-8849976)
[»] chr3 (2 HSPs)
chr3 (113-161)||(40739930-40739978)
chr3 (113-162)||(42629312-42629361)
[»] chr4 (1 HSPs)
chr4 (111-194)||(43935834-43935917)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 29661760 - 29661977
Alignment:
Q  16 gagagtatgaatgaaaacaataatgtaaattgtattaatagagatagagaagatgatgtaaaatacacaatgcattaatcatttatatatagtggatt-- 113  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  29661760 gagagtatgaatgaagacaataatgtaaattgtattaatagagatagagaagatgatgtaaaatacacaatgcattaatcatttatatatggtggattat 29661859  T
Q  114 -----------atggttaattgactaacaagtaaactctatgatcaagttaatctctaaccgattagatcaatcttagtcaactaacttctacttaaatt 202  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||    
T  29661860 ggtaagtgattatggttaattgactaacaagtaaactctatgatcaagttaatctctaactgactaaatcaatcttagtcaactaacttctacttaaatt 29661959  T
Q  203 aatctctgacaaacatgt 220  Q
    ||||||||||||||||||    
T  29661960 aatctctgacaaacatgt 29661977  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 28428327 - 28428366
Alignment:
Q  123 tgactaacaagtaaactctatgatcaagttaatctctaac 162  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  28428327 tgactaacaagtaaaccctatgatcaagttagtctctaac 28428366  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 34015962 - 34015914
Alignment:
Q  113 tatggttaattgactaacaagtaaactctatgatcaagttaatctctaa 161  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34015962 tatggttacttgactgacaagtaaactctatgatcaagttaatctctaa 34015914  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 22311081 - 22311161
Alignment:
Q  113 tatggttaattgactaacaagtaaactctatgatcaagttaatctctaaccgattagatcaatcttagtcaactaacttct 193  Q
    |||||||| | ||||| |||||||||| ||||||||||||||| ||||| | | ||  ||||||||| | |||||||||||    
T  22311081 tatggttactcgactatcaagtaaactttatgatcaagttaatatctaatcaactaactcaatcttattaaactaacttct 22311161  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 38163170 - 38163122
Alignment:
Q  113 tatggttaattgactaacaagtaaactctatgatcaagttaatctctaa 161  Q
    |||||||| ||||||| ||||||||| |||||||||||||||| |||||    
T  38163170 tatggttacttgactaccaagtaaaccctatgatcaagttaatttctaa 38163122  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 34880644 - 34880594
Alignment:
Q  113 tatggttaattgactaacaagtaaactct-atgatcaagttaatctctaac 162  Q
    |||||||| ||||||| ||||||||| || |||||||||||||||||||||    
T  34880644 tatggttatttgactagcaagtaaacccttatgatcaagttaatctctaac 34880594  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 23398067 - 23398118
Alignment:
Q  111 attatggttaattgactaacaagtaaactctatgatcaagttaatctctaac 162  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  23398067 attatggttacttgactaacaagtaaactctatgatcaagtaagtctctaac 23398118  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 23398149 - 23398201
Alignment:
Q  110 gattatggttaattgactaacaagtaaactctatgatcaagttaatctctaac 162  Q
    ||||||||||  ||||||||||||||||| |||||||| ||| | ||||||||    
T  23398149 gattatggtttcttgactaacaagtaaaccctatgatctagtaagtctctaac 23398201  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 18072859 - 18072811
Alignment:
Q  114 atggttaattgactaacaagtaaactctatgatcaagttaatctctaac 162  Q
    ||||||| | |||||||||||||||||||| ||| ||||||||||||||    
T  18072859 atggttactcgactaacaagtaaactctatcatcgagttaatctctaac 18072811  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 8849934 - 8849976
Alignment:
Q  115 tggttaattgactaacaagtaaactctatgatcaagttaatct 157  Q
    |||||||||||||| |||||||||  |||||||||||||||||    
T  8849934 tggttaattgactatcaagtaaaccatatgatcaagttaatct 8849976  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 40739930 - 40739978
Alignment:
Q  113 tatggttaattgactaacaagtaaactctatgatcaagttaatctctaa 161  Q
    |||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  40739930 tatggttacttgactaccaagttaactctatgattaagttaatctctaa 40739978  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 42629312 - 42629361
Alignment:
Q  113 tatggttaattgactaacaagtaaactctatgatcaagttaatctctaac 162  Q
    |||||||| |||||||||||||||||   |||||||| ||||||||||||    
T  42629312 tatggttacttgactaacaagtaaacctaatgatcaaattaatctctaac 42629361  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 43935834 - 43935917
Alignment:
Q  111 attatggttaattgactaacaagtaaactctatgatcaagttaatctctaaccgattagatcaatcttagtcaactaacttcta 194  Q
    |||||||||| ||||||  ||||||||| ||||||| |||||||||| ||||   |||  |||||||||  |||||||||||||    
T  43935834 attatggttacttgactgtcaagtaaacgctatgattaagttaatctttaactatttatctcaatcttatccaactaacttcta 43935917  T

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