View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10580_low_5 (Length: 439)
Name: NF10580_low_5
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 14340973 - 14341383
Alignment:
| Q |
18 |
gaatgtttccattagtcaaatttacatatgttgatgtttacacagtcaaatatacacttatgagcaatgcaaggagccaaggtaat---gttcaattaag |
114 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
14340973 |
gaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggtaattatgttcaattaag |
14341072 |
T |
|
| Q |
115 |
tttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgcatgatatgtggcaggttttgggaatccattg |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
14341073 |
tttttgttatctttaaatgatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttatgaatccattg |
14341172 |
T |
|
| Q |
215 |
gaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatggaacaatttatggcattgcatgtgatgatccct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
14341173 |
gaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatggaacattttatggctttgcatgtgatgacccct |
14341272 |
T |
|
| Q |
315 |
ctacatatatcagctgggatggtatacactactcccaagcagcaaatgaatggattgctaaacaaattctctatggttccttctctgatccaccagtttc |
414 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14341273 |
ctacatatatcagttgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaattctctctggttccttctctgatccaccagtttc |
14341372 |
T |
|
| Q |
415 |
acttgggaatg |
425 |
Q |
| |
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||||||||||| |
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| T |
14341373 |
acttgggaatg |
14341383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 3602093 - 3602400
Alignment:
| Q |
18 |
gaatgtttccattagtcaaatttacatatgttgatgtttacacagtcaaatatacacttatgagcaatgcaaggagccaaggtaatgttcaattaagttt |
117 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
3602093 |
gaatgtttccattagccaaatttacatatgttgatgtttacacggtcaaatatacacttatcagcaatgcaaggaaccaaggtaatgttcaattaagttt |
3602192 |
T |
|
| Q |
118 |
ttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgcatgatatgtggcaggttttgggaatccattggaa |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
3602193 |
ttgttatctttaaaatatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttgtgaatccattggaa |
3602292 |
T |
|
| Q |
218 |
ttttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatggaacaatttatggcattgcatgtgatgatccctcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
3602293 |
ttttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatggaacagtttatggcattgcatgtgatgattcctcta |
3602392 |
T |
|
| Q |
318 |
catatatc |
325 |
Q |
| |
|
|||||||| |
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|
| T |
3602393 |
catatatc |
3602400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 3602399 - 3602477
Alignment:
| Q |
347 |
tcccaagcagcaaatgaatggattgctaaacaaattctctatggttccttctctgatccaccagtttcacttgggaatg |
425 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602399 |
tcccaagcagcaaaggaatggattgctaaacaaattctctatggttccttctctgatccaccagtttcacttgggaatg |
3602477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 3569092 - 3569179
Alignment:
| Q |
22 |
gtttccattagtcaaatttacatatgttgatgtttacacagtcaaatatacacttatgagcaatgcaaggagccaaggtaatgttcaa |
109 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| ||||| ||||||||||| |||||||||||| |
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| T |
3569092 |
gtttccattagccaaatttacatatgttgatgtttacacagtaaaatagaaacttatcagcaacgcaaggagccagggtaatgttcaa |
3569179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 3591155 - 3591244
Alignment:
| Q |
22 |
gtttccattagtcaaatttacatatgttgatgtttacacagtcaaatatacacttatgagcaatgcaagga--gccaaggtaatgttcaa |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||| |||||||||||||||| |
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| T |
3591155 |
gtttccattagccaaatttacatatgttgatgtttacacagtaaaatataaacttatcagcaacgcaaggaataccaaggtaatgttcaa |
3591244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 3569487 - 3569570
Alignment:
| Q |
152 |
gtgcacaattaagttttaacttttatgcttgcatgatatgtggcaggttttgggaatccattggaattttgttgtggaagttac |
235 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||||| |||| ||| |||||||||||||||||| |||||||||||| |
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|
| T |
3569487 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattggaattttgctgtggaagttac |
3569570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 3577213 - 3577296
Alignment:
| Q |
152 |
gtgcacaattaagttttaacttttatgcttgcatgatatgtggcaggttttgggaatccattggaattttgttgtggaagttac |
235 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||| |||||| ||||||| ||||||||| ||||||| |||||||||||| |
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| T |
3577213 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggctggttttgtaaatccattgaaattttgctgtggaagttac |
3577296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 3591554 - 3591637
Alignment:
| Q |
152 |
gtgcacaattaagttttaacttttatgcttgcatgatatgtggcaggttttgggaatccattggaattttgttgtggaagttac |
235 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||| |||||||||||||| |||||||||| ||| || ||||||| |||| |
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| T |
3591554 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
3591637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 152 - 423
Target Start/End: Original strand, 1409817 - 1410081
Alignment:
| Q |
152 |
gtgcacaattaagttttaacttttatgcttgcatgatatgtggcaggttttgggaatccattggaattttgttgtggaagttaccaaggtaacgaaatac |
251 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || |||||||||||||| |||||||||||||||||| |||||||||||| | ||| || | ||| |
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|
| T |
1409817 |
gtgcacaattaggttttaactctcatgcttg----atttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacataa |
1409912 |
T |
|
| Q |
252 |
attattgtgggaagaagtccataaaaaatggaacaatttatggcattgcatgtgatgatccctctacatatatcagctgggatggtatacactactccca |
351 |
Q |
| |
|
||| ||||| |||| |||||| |||||||||| ||||||||| | |||||||| |||| |||| | |||| || |||||||||||||||||||| || |
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|
| T |
1409913 |
att---gtgggttgaaggccataataaatggaacagtttatggcaatccatgtgataatccttctaaacatattagttgggatggtatacactactctca |
1410009 |
T |
|
| Q |
352 |
agcagcaaatgaatggattgctaaacaaattctctatggttccttctctgatccaccagtttcacttgggaa |
423 |
Q |
| |
|
||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
1410010 |
agctgcaaatcaatgggttgctaaacaaattctctatggttccttctctgatccaccagtttcagttgggaa |
1410081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 1409500 - 1409587
Alignment:
| Q |
22 |
gtttccattagtcaaatttacatatgttgatgtttacacagtcaaatatacacttatgagcaatgcaaggagccaaggtaatgttcaa |
109 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||| |||||||| |||||| |||||||||| ||||||||||||||||||| |
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|
| T |
1409500 |
gtttccattagccaagtttacatatgttgatgtgtacacagccaaatataaacttattagcaatgcaaagagccaaggtaatgttcaa |
1409587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 1417792 - 1417898
Alignment:
| Q |
319 |
atatatcagctgggatggtatacactactcccaagcagcaaatgaatggattgctaaacaaattctctatggttccttctctgatccaccagtttcactt |
418 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||| ||| ||||||| || |||| || |||| ||||||||| |||||| |||| || || |
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| T |
1417792 |
atatattagttgggatggtatacactactcccaaagagcaaaccaattgattgctgaaaaaatcatccatggatccttctctcatccacaagttccaatt |
1417891 |
T |
|
| Q |
419 |
gggaatg |
425 |
Q |
| |
|
||||||| |
|
|
| T |
1417892 |
gggaatg |
1417898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 1413089 - 1413185
Alignment:
| Q |
329 |
tgggatggtatacactactcccaagcagcaaatgaatggattgctaaacaaattctctatggttccttctctgatccaccagtttcacttgggaatg |
425 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||| ||||||| || |||| || |||| ||||||||||||||||||||| || ||||||||| |
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| T |
1413089 |
tgggatggcatacactactcccaaagggcaaaccaattgattgctgaaaaaatcatccatggatccttctctgatccaccagttccaattgggaatg |
1413185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 1422322 - 1422418
Alignment:
| Q |
329 |
tgggatggtatacactactcccaagcagcaaatgaatggattgctaaacaaattctctatggttccttctctgatccaccagtttcacttgggaatg |
425 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||| ||||||| || |||| || |||| ||||||||||||||||||||| || ||||||||| |
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|
| T |
1422322 |
tgggatggcatacactactcccaaagggcaaaccaattgattgctgaaaaaatcatccatggatccttctctgatccaccagttccaattgggaatg |
1422418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 1412558 - 1412630
Alignment:
| Q |
34 |
caaatttacatatgttgatgtttacacagtcaaatatacacttatgagcaatgcaaggagccaaggtaatgtt |
106 |
Q |
| |
|
||||||||||||||||||| | |||| || ||||||| ||| || |||||||||||||||| |||| ||||| |
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|
| T |
1412558 |
caaatttacatatgttgatatgtacaaagccaaatatgaactaatcagcaatgcaaggagccgaggtgatgtt |
1412630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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