View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10580_low_6 (Length: 407)
Name: NF10580_low_6
Description: NF10580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10580_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 25945725 - 25946114
Alignment:
| Q |
1 |
atgcattagcattggattcccttgctcaatactttagtcacatgcacaaaagatatgtcgagtattataactcgtgtaaattggcatgcgttgcatactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25945725 |
atgcattagcattggattcccttgctcaatactttaggcacatgcacaaaagatatgtcgagtattataagtcgtgtaaattggcatgcgttgcatactc |
25945824 |
T |
|
| Q |
101 |
atatgctctgcctttgtttatcagagtgttccaaggatgggatcctcttcgaaatccatctcatggtttggagttggtatcagagtggaagacattgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25945825 |
atatgctctgcctttgtttatcagagtgttccaaggattggatcctcttcgaaatccatctcatggtttggagttggtatcagagtggaagacattgctt |
25945924 |
T |
|
| Q |
201 |
ctaggagatgatagttttcgtatacaagacatatcatcaccttatacacatttggtttcagaggttgtattgccggctgttagaaaatctggtatcaata |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25945925 |
ctaggagatgatagttttggtatacaagtcatatcatcaccttatacacatttggtttcagaggttgtattgccggctgttagaaaatctggtatcaata |
25946024 |
T |
|
| Q |
301 |
cctggcaagcacaggatcctgagccgatgctactgtttttggattcatgggaaaagttgcttccttcttcagttcttgctactatattag |
390 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25946025 |
cctggcaagcacgggatcctgagccaatgctacggtttttggattcatggaaaaagttgcttccttcttcagttcttgctactatattag |
25946114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 4 - 390
Target Start/End: Original strand, 2661956 - 2662342
Alignment:
| Q |
4 |
cattagcattggattcccttgctcaatactttagtcacatgcacaaaagatatgtcgagtattataactcgtgtaaattggcatgcgttgcatactcata |
103 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||| |||||| ||| ||||| |||| | |||||| |
|
|
| T |
2661956 |
cattaacattggattcccttgctcaatgctttatggacatgcacaaaagatatgctgaggattataagctgtgtaatttgtcatgcattgcttgctcata |
2662055 |
T |
|
| Q |
104 |
tgctctgcctttgtttatcagagtgttccaaggatgggatcctcttcgaaatccatctcatggtttggagttggtatcagagtggaagacattgcttcta |
203 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
2662056 |
tgctttgcctttgtttatcagaatgttccaaggatgggatcctcttcgaaatccatctcatggtttggagttggtatcacggtggaaggcattgcttcaa |
2662155 |
T |
|
| Q |
204 |
ggagatgatagttttcgtatacaagacatatcatcaccttatacacatttggtttcagaggttgtattgccggctgttagaaaatctggtatcaatacct |
303 |
Q |
| |
|
||||||||| ||||| |||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
2662156 |
ggagatgattgttttgatatatgggacatgtcatcaccttatactcaattggtttcagaggttgtattgccagctgttagaatatctggtatcaatacct |
2662255 |
T |
|
| Q |
304 |
ggcaagcacaggatcctgagccgatgctactgtttttggattcatgggaaaagttgcttccttcttcagttcttgctactatattag |
390 |
Q |
| |
|
|||| |||| ||||||||| || ||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2662256 |
ggcatgcacgggatcctgaaccaatgctacggtttttggagtcgtgggaaaaattgcttccttcttcagttcttgctactatattag |
2662342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University