View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_high_10 (Length: 242)
Name: NF10581_high_10
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 21840109 - 21839887
Alignment:
| Q |
1 |
ttagctgaaggtgacaagaatgagatgtgaattccatgagagaataacttgttggataattgcacaaatggactaatgtgaccgaatgcaaggaagggaa |
100 |
Q |
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| T |
21840109 |
ttagctgaaggtgacaagaatgagatgtgaattccatgagagaataacttgttggataattgcacaaatggactaatgtgaccaaatgctaggaagggaa |
21840010 |
T |
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| Q |
101 |
acataactacatgaatctcactgttgattatcctttcaccactcatctttgcctaatttattatcactttgtgttgtttctaagaatggactaacaagaa |
200 |
Q |
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| T |
21840009 |
acatagctacatgaatctcactgttgattatcctttcaccactcatctttgcctaatttattatcactttgtgttgtttctaagaatggtcttaccaaga |
21839910 |
T |
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| Q |
201 |
tggtggccaaggatgctcttata |
223 |
Q |
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| T |
21839909 |
tggtggccaacggttctcttata |
21839887 |
T |
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Back To:
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 40443365 - 40443294
Alignment:
| Q |
33 |
tccatgagagaataacttgttggataattgcacaaatggactaatgtgaccgaatgcaaggaagggaaacat |
104 |
Q |
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| T |
40443365 |
tccatgagagaataatttgtttgataattgaacaaaaggactaatgtgaccaaatacaaggaatggaaacat |
40443294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 40440350 - 40440271
Alignment:
| Q |
25 |
atgtgaattccatgagagaataacttgttggataattgcacaaatggactaatgtgaccgaatgcaaggaagggaaacat |
104 |
Q |
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| T |
40440350 |
atgtgaactccttgagaaaatagcttgttggataattgaacaaaaggacttatatgaccaaatgcaaggaatggaaacat |
40440271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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