View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10581_high_3 (Length: 330)

Name: NF10581_high_3
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10581_high_3
NF10581_high_3
[»] chr5 (4 HSPs)
chr5 (16-196)||(22808060-22808240)
chr5 (196-315)||(22809381-22809499)
chr5 (147-199)||(22808106-22808158)
chr5 (212-274)||(33231855-33231917)
[»] chr8 (7 HSPs)
chr8 (16-199)||(19646274-19646457)
chr8 (196-315)||(19647574-19647693)
chr8 (64-115)||(19646407-19646458)
chr8 (212-274)||(192784-192846)
chr8 (212-274)||(720388-720450)
chr8 (212-274)||(881495-881557)
chr8 (144-197)||(19646462-19646515)
[»] chr4 (23 HSPs)
chr4 (16-199)||(22696840-22697023)
chr4 (45-199)||(28949082-28949236)
chr4 (45-199)||(22714825-22714979)
chr4 (45-199)||(22990246-22990400)
chr4 (196-315)||(22698114-22698233)
chr4 (196-315)||(22982297-22982416)
chr4 (196-315)||(22995884-22996003)
chr4 (40-199)||(46956548-46956710)
chr4 (64-115)||(46956660-46956711)
chr4 (64-115)||(22714824-22714875)
chr4 (64-115)||(22990350-22990401)
chr4 (64-115)||(28949081-28949132)
chr4 (212-274)||(24036838-24036900)
chr4 (144-197)||(22990405-22990458)
chr4 (144-197)||(46956715-46956768)
chr4 (64-115)||(22696973-22697024)
chr4 (144-197)||(22697028-22697081)
chr4 (144-197)||(22714767-22714820)
chr4 (144-197)||(28949024-28949077)
chr4 (40-80)||(22714978-22715018)
chr4 (40-80)||(22990207-22990247)
chr4 (64-104)||(22990410-22990450)
chr4 (64-104)||(46956720-46956760)
[»] chr1 (5 HSPs)
chr1 (16-199)||(4344187-4344369)
chr1 (196-315)||(4345370-4345489)
chr1 (64-115)||(4344319-4344370)
chr1 (212-274)||(46406886-46406948)
chr1 (144-197)||(4344374-4344427)
[»] chr7 (4 HSPs)
chr7 (40-199)||(20087600-20087759)
chr7 (64-115)||(20087709-20087760)
chr7 (144-197)||(20087764-20087817)
chr7 (64-104)||(20087769-20087809)
[»] chr2 (6 HSPs)
chr2 (53-199)||(23362505-23362651)
chr2 (196-315)||(23361559-23361678)
chr2 (16-57)||(23376313-23376354)
chr2 (64-115)||(23362504-23362555)
chr2 (212-274)||(14036025-14036087)
chr2 (212-274)||(13895398-13895460)
[»] scaffold0009 (4 HSPs)
scaffold0009 (45-191)||(200716-200862)
scaffold0009 (149-199)||(200793-200843)
scaffold0009 (40-80)||(200861-200901)
scaffold0009 (144-197)||(200640-200693)
[»] chr3 (2 HSPs)
chr3 (196-315)||(7011035-7011154)
chr3 (212-274)||(51126007-51126069)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 22808060 - 22808240
Alignment:
Q  16 aacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22808060 aacctatgtgactaggatgtgatgggaattaagctaggaagtactataaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 22808159  T
Q  116 agtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttat 196  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22808160 agtctttaatgttgtaatgttccgttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtactattat 22808240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 22809381 - 22809499
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22809381 tgttggaca-ggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22809479  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||| ||||||||    
T  22809480 agtttgtccatagaatatat 22809499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 22808106 - 22808158
Alignment:
Q  147 taaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  22808106 taaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt 22808158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 33231855 - 33231917
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||  |||||||    
T  33231855 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagtagatattttcat 33231917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 19646274 - 19646457
Alignment:
Q  16 aacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  19646274 aacctgtgtgactaggatgtaatgggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactcttatgttt 19646373  T
Q  116 agtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  19646374 aatctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgtt 19646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 19647574 - 19647693
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19647574 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 19647673  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  19647674 agtttgtccatcgaatatat 19647693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 19646407 - 19646458
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| |||||||  |||||| ||||||||||||||||||    
T  19646407 aattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgttt 19646458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 192784 - 192846
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  192784 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 192846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 720388 - 720450
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  720388 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 720450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 881495 - 881557
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  881495 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 19646462 - 19646515
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  19646462 ctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatg 19646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 22696840 - 22697023
Alignment:
Q  16 aacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || |||||    
T  22696840 aacctgtgtgactaggatgtaatgggaattaacctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactattttgttt 22696939  T
Q  116 agtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  22696940 agtctttaatgttgtaatgctctgttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgtt 22697023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 28949236 - 28949082
Alignment:
Q  45 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 144  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  28949236 taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 28949137  T
Q  145 tttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28949136 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgtt 28949082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 22714979 - 22714825
Alignment:
Q  45 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 144  Q
    |||| ||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  22714979 taagataggatgtactatgaattaagaagtaatctaggaagtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 22714880  T
Q  145 tttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22714879 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgtt 22714825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 22990246 - 22990400
Alignment:
Q  45 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 144  Q
    |||| ||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  22990246 taagataggatgtactatgaattaagaagtaatctaggaagtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 22990345  T
Q  145 tttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22990346 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgtt 22990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 22698114 - 22698233
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22698114 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22698213  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  22698214 agtttgtccatcgaatatat 22698233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 22982416 - 22982297
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22982416 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22982317  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  22982316 agtttgtccatcgaatatat 22982297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 22996003 - 22995884
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22996003 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 22995904  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  22995903 agtttgtccatcgaatatat 22995884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 46956548 - 46956710
Alignment:
Q  40 ggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtt---tagtctttaatgttgtaatgtt 136  Q
    |||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  46956548 ggaagtaagctagaaagtactatgaattaagaagtaatctaggaagtactagtaactatgaagcactgttatattatttagtctttaatgttgtaatgtt 46956647  T
Q  137 ctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    |  || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46956648 ccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtactgttatgtt 46956710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 46956660 - 46956711
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  46956660 aattaagaagtaatctaggaagtactagtaactatcaagtactgttatgttt 46956711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 22714875 - 22714824
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  22714875 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 22714824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 22990350 - 22990401
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  22990350 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 22990401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 28949132 - 28949081
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  28949132 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 28949081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 24036900 - 24036838
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  24036900 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 24036838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 22990405 - 22990458
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||    
T  22990405 ctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 22990458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 46956715 - 46956768
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||    
T  46956715 cttttaattaggaagtaatctaagaagtgctagtaactatgaagtactattatg 46956768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 22696973 - 22697024
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| |||||||  |||||| ||||||| ||||||||||    
T  22696973 aattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgttt 22697024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 22697028 - 22697081
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  22697028 ctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatg 22697081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 22714820 - 22714767
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| |||||||||||  |||| ||||||||||||||||||| |||||    
T  22714820 ctttcaattaggaagtaatctaaaaagtgctagtaactatgaagtactcttatg 22714767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 28949077 - 28949024
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| |||||||||||  |||| ||||||||||||||||||| |||||    
T  28949077 ctttcaattaggaagtaatctaaaaagtgctagtaactatgaagtactcttatg 28949024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 22715018 - 22714978
Alignment:
Q  40 ggaattaagctaggaagtattatgaattaagaagtaatcta 80  Q
    |||| |||| ||||||||| |||||||||||||||||||||    
T  22715018 ggaagtaagttaggaagtactatgaattaagaagtaatcta 22714978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 22990207 - 22990247
Alignment:
Q  40 ggaattaagctaggaagtattatgaattaagaagtaatcta 80  Q
    |||| |||| ||||||||| |||||||||||||||||||||    
T  22990207 ggaagtaagttaggaagtactatgaattaagaagtaatcta 22990247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 22990410 - 22990450
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagta 104  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  22990410 aattaggaagtaatctaagaagtgctagtaactatgaagta 22990450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 46956720 - 46956760
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagta 104  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  46956720 aattaggaagtaatctaagaagtgctagtaactatgaagta 46956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 4344187 - 4344369
Alignment:
Q  16 aacctgtgtgactaggatgtgatgggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  4344187 aacctgtgtgactaggatgtaatgggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactgttatgttt 4344286  T
Q  116 agtctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  4344287 agtctttaatgtt-taatgtttcgttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgtt 4344369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 4345370 - 4345489
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4345370 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 4345469  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  4345470 agtttgtccatcgaatatat 4345489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 4344319 - 4344370
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  4344319 aattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgttt 4344370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 46406886 - 46406948
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| ||||||||  | || ||||| |||||| ||||||||    
T  46406886 ggtaatagaatgattcaagaaaggtttcaacactcgagtgagactgttagtagatgttttcat 46406948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 4344374 - 4344427
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  4344374 ctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatg 4344427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 20087600 - 20087759
Alignment:
Q  40 ggaattaagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctg 139  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |    
T  20087600 ggaagtaagctaggaagtcttatgaattaagaagtaatctaggaagtactagtaactatgaagtactgttatatttagtctttaatgttgtaatgttccg 20087699  T
Q  140 ttgtctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20087700 ttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtactgttatgtt 20087759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 20087709 - 20087760
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  20087709 aattaagaagtaatctagaaagtactagtaactatgaagtactgttatgttt 20087760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 20087764 - 20087817
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  20087764 cttttaattaggaagtaatctaagaagtactagtaactatgaagtactattatg 20087817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 20087769 - 20087809
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagta 104  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  20087769 aattaggaagtaatctaagaagtactagtaactatgaagta 20087809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 23362651 - 23362505
Alignment:
Q  53 gaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtctttaaatt 152  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23362651 gaagtactatgaattaagaagtaatctacgaagtactagtaactattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt 23362552  T
Q  153 aagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  23362551 aagaagtaatctaggaagtactaataactatgaagtactgttatgtt 23362505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 23361678 - 23361559
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  23361678 tgttggacatggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagtttctttcttg 23361579  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  23361578 agtttgtccatcgaatatat 23361559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 23376354 - 23376313
Alignment:
Q  16 aacctgtgtgactaggatgtgatgggaattaagctaggaagt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23376354 aacctgtgtgactaggatgtgatgggaattaagctaggaagt 23376313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 23362555 - 23362504
Alignment:
Q  64 aattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 115  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  23362555 aattaagaagtaatctaggaagtactaataactatgaagtactgttatgttt 23362504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 14036025 - 14036087
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  14036025 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 14036087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 13895398 - 13895460
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||  |||||||    
T  13895398 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagtagatattttcat 13895460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 200862 - 200716
Alignment:
Q  45 taagctaggaagtattatgaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttctgttgtc 144  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  200862 taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc 200763  T
Q  145 tttaaattaagaagtaatctaggaagtactagtaactatgaagtact 191  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||    
T  200762 tttaaattaagaagtaatctaggaagtacctgtaactatgaagtact 200716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 200843 - 200793
Alignment:
Q  149 aattaagaagtaatctaggaagtactagtaactatgaagtactgttatgtt 199  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  200843 aattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtt 200793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 200901 - 200861
Alignment:
Q  40 ggaattaagctaggaagtattatgaattaagaagtaatcta 80  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  200901 ggaagtaagctaggaagtactatgaattaagaagtaatcta 200861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 200693 - 200640
Alignment:
Q  144 ctttaaattaagaagtaatctaggaagtactagtaactatgaagtactgttatg 197  Q
    |||| ||||| ||| ||||||| ||||| ||||||||||||||||||| |||||    
T  200693 ctttcaattaggaattaatctaagaagtgctagtaactatgaagtactcttatg 200640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 7011035 - 7011154
Alignment:
Q  196 tgttggacatggagtgggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgtaagttgcttgcttg 295  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7011035 tgttggacatggagtgggtaataaaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcatgatgtgttagttgcttgcttg 7011134  T
Q  296 agtttgtccatcgaatatat 315  Q
    ||||||||||||||||||||    
T  7011135 agtttgtccatcgaatatat 7011154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 51126069 - 51126007
Alignment:
Q  212 ggtaatagaattattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat 274  Q
    ||||||||||| |||||||||||||| |||||||| || || ||||| ||||||| |||||||    
T  51126069 ggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcat 51126007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University