View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10581_high_8 (Length: 248)

Name: NF10581_high_8
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10581_high_8
NF10581_high_8
[»] chr3 (10 HSPs)
chr3 (29-237)||(22352185-22352393)
chr3 (50-237)||(22435003-22435190)
chr3 (32-237)||(22466308-22466513)
chr3 (32-223)||(22356335-22356526)
chr3 (32-237)||(22441093-22441298)
chr3 (32-217)||(22633812-22633997)
chr3 (32-237)||(22366281-22366483)
chr3 (51-237)||(22628816-22629002)
chr3 (32-76)||(24735027-24735071)
chr3 (32-88)||(22429918-22429974)
[»] chr4 (1 HSPs)
chr4 (29-146)||(29604164-29604281)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 22352185 - 22352393
Alignment:
Q  29 acggagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgca 128  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  22352185 acggagaacttgaagctcgtgtaagtgttgaatgccagttggtaacgtcatcagttggggaatgtaccataaagtgagctttttcagagaacccaatgca 22352284  T
Q  129 ccttcgtcaataaggatgtgactcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22352285 ccttcgtcaataaggatgtgactcaattcatggaaatcagcaagatatagtttcttcaaattcataaacaacccttcttgaaaatgtaaactttcgaaat 22352384  T
Q  229 tgtcttcat 237  Q
    |||||||||    
T  22352385 tgtcttcat 22352393  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 22435003 - 22435190
Alignment:
Q  50 taagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcaccttcgtcaataaggatgtga 149  Q
    ||||||||||||||||||||||||||||||||   |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |    
T  22435003 taagtgttgaatgccagttggtaacgtcatcaacaggggaatgtaccataaagtgagctttttcagagaacccaatgcaccttcgtcaataaggatgtta 22435102  T
Q  150 ctcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcat 237  Q
    |||||   |  |||||||  |||| |||||| |||||||||||||||| | ||||||| ||||||||| ||||| || ||||||||||    
T  22435103 ctcaagctacagaaatcacgaagatatagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcat 22435190  T

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Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 22466308 - 22466513
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcacct 131  Q
    |||||||  ||| ||||| ||||| ||||||||||||||||| ||||| ||||||||| || |  ||||  ||||||||| |||||||||||||||||||    
T  22466308 gagaacttcaaggttgtgcaagtgatgaatgccagttggtaatgtcatgagttgggggttgaaggataagttgagctttttcagagaacccaatgcacct 22466407  T
Q  132 tcgtcaataaggatgtgactcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgt 231  Q
    ||||| |||||||||||||||||   || ||||| || |||| |||||| |||||||||| ||||| ||||||| |||||||||| |||||| || ||||    
T  22466408 tcgtctataaggatgtgactcaaggaatagaaattagtaagatatagttccttcaaattcttaaaccacccatcctgaaaatgtatactttcaaatttgt 22466507  T
Q  232 cttcat 237  Q
    ||||||    
T  22466508 cttcat 22466513  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 22356335 - 22356526
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcacct 131  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||||||  |||||     ||| ||||||||| |||||||||||||||||||    
T  22356335 gagaacttcaagcttgtgtaagtgttgaatgccagttggtaaagtcatcagttggaagatggcgtcaaaagtgagctttttcagagaacccaatgcacct 22356434  T
Q  132 tcgtcaataaggatgtgactcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttc 223  Q
    |||||||| |||||||||||||| |    ||||| ||||||| |||||| |||||| ||| ||||| | |||||||| ||||||||||||||    
T  22356435 tcgtcaattaggatgtgactcaaattgaagaaattagcaagatatagttccttcaagttcttaaaccatccatcttggaaatgtaaactttc 22356526  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 22441093 - 22441298
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcacct 131  Q
    |||||||  |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||  | ||| ||| |||| |||| |||||||||    
T  22441093 gagaacttcaagcttttgtaagtgttgaatgccacttggtaacgtcatcagttgggggatggaccctaattttagcattttcagacaaccgaatgcacct 22441192  T
Q  132 tcgtcaataaggatgtgactcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgt 231  Q
    |||||||||||||| |  ||||||| || ||||| |  || |  ||||| |||||||||| ||||| | ||| ||||||||||||| |||||||| ||||    
T  22441193 tcgtcaataaggatatatctcaatttattgaaatgaaaaataattagttccttcaaattcgtaaaccatccaacttgaaaatgtaacctttcgaatttgt 22441292  T
Q  232 cttcat 237  Q
    ||||||    
T  22441293 cttcat 22441298  T

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Target: chr3; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 22633812 - 22633997
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcacct 131  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||||     ||| ||||||||  |||||||||||||||||||    
T  22633812 gagaacttcaagcttgtgtaagtgttgaatgccagttggtaacatcatcagttcggggatggctttcaaagtgagctttctcagagaacccaatgcacct 22633911  T
Q  132 tcgtcaataaggatgtgactcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaa 217  Q
    ||||||||||||||||||||||| | |  |||||||  || |   || |||||||||||||||||| | ||||||| |||||||||    
T  22633912 tcgtcaataaggatgtgactcaacttaaagaaatcaaaaatagccaggttcttcaaattcataaaccatccatcttcaaaatgtaa 22633997  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 22366281 - 22366483
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcacct 131  Q
    |||||||  |||||| ||||||||||||||||||||||||||  || ||||||||||| ||    ||||| |||| |||| |||||||| ||| ||||||    
T  22366281 gagaacttcaagcttttgtaagtgttgaatgccagttggtaaactcgtcagttgggggttgccgtataaagtgagttttttcagagaactcaacgcacct 22366380  T
Q  132 tcgtcaataaggatgtgactcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgt 231  Q
    ||||||||||||||||||||||| | || ||||| | |||   | |||| ||| |||||| |||   | ||| ||||||||||||| ||||| || ||||    
T  22366381 tcgtcaataaggatgtgactcaagttattgaaatgatcaatcgacagttcctttaaattcttaa---atccaacttgaaaatgtaacctttccaatttgt 22366477  T
Q  232 cttcat 237  Q
    ||||||    
T  22366478 cttcat 22366483  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 22628816 - 22629002
Alignment:
Q  51 aagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgcaccttcgtcaataaggatgtgac 150  Q
    ||||||||||||| ||||||||||||| | ||||| |   || |   |||| ||||||||| |||||| ||||||| |||||||||||||| ||||| ||    
T  22628816 aagtgttgaatgctagttggtaacgtcttgagttgagtagtgaaggttaaattgagctttttcagagagcccaatgaaccttcgtcaataacgatgtaac 22628915  T
Q  151 tcaattcatggaaatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcat 237  Q
    |||| | ||  |   ||  || |  ||||| |||||||||||||||| | ||||||||||||||||| ||||| || ||||||||||    
T  22628916 tcaagttatcaagtccaaaaatagttagttccttcaaattcataaaccatccatcttgaaaatgtaacctttccaatttgtcttcat 22629002  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 24735027 - 24735071
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgt 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  24735027 gagaacttgaagcttgtgtaagtgttgaatgccagttggtaacgt 24735071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 22429918 - 22429974
Alignment:
Q  32 gagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggg 88  Q
    |||||||  |||||||||||||||||||||  ||| |||||||||  ||||||||||    
T  22429918 gagaacttcaagcttgtgtaagtgttgaatatcagctggtaacgttctcagttgggg 22429974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 29604164 - 29604281
Alignment:
Q  29 acggagaactagaagcttgtgtaagtgttgaatgccagttggtaacgtcatcagttgggggatggaccataaactgagcttttccagagaacccaatgca 128  Q
    |||||||||| ||||||| |||||||||||||||| |||||||||| || | ||||  ||||||    |||   |||||||||  ||||||| ||  |||    
T  29604164 acggagaacttgaagcttctgtaagtgttgaatgcaagttggtaacatcttgagttcagggatgacaaatagtttgagctttttaagagaacacaccgca 29604263  T
Q  129 ccttcgtcaataaggatg 146  Q
    ||||||||||||||||||    
T  29604264 ccttcgtcaataaggatg 29604281  T

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