View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_1 (Length: 459)
Name: NF10581_low_1
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Complemental strand, 3219461 - 3219019
Alignment:
| Q |
15 |
atagaaaattgaagagactgaatgcaataaggaaaaggatgtagattttctttcgtccatcgaggtgattgtcccactcttaattgttatacatacttta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3219461 |
atagaaaattgaagagactgaatgcaataaggaaaaagatgtagattttctttcgtccatagaggtgattgtcccactcttaattgttatacatacttta |
3219362 |
T |
|
| Q |
115 |
ttatactatatactttatatttatttctgggtaggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219361 |
ttatactatatactttatatttatttctgggtaggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttct |
3219262 |
T |
|
| Q |
215 |
tattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219261 |
tattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagtc |
3219162 |
T |
|
| Q |
315 |
ctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagatg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3219161 |
ctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgctgcccagaacagatg |
3219062 |
T |
|
| Q |
415 |
ttatgcgcattagaccatggtatattctatttgccttttcttc |
457 |
Q |
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| T |
3219061 |
ttatgcgcattagacgatggtatattctatttgccttttcttc |
3219019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 15986227 - 15986661
Alignment:
| Q |
15 |
atagaaaattgaagagactgaatgcaataaggaaaaggatgtagattttctttcgtccatcgaggtgattgtcccactcttaattgttatacatacttta |
114 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| |
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| T |
15986227 |
atagaaaattgaagagactgaaatcaataaggaaaaagatgtagattttctttcgtccatagaggtgattgccctactcttaattgttatacat------ |
15986320 |
T |
|
| Q |
115 |
ttatactatatactttatatttatttctgggtaggtagatactgtgtatttggatcatattgtatgaagttgacaaagtgaatgtttttaagcaggttct |
214 |
Q |
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||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| ||| |||||||||| |||| ||||||| ||||||||||| |
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| T |
15986321 |
-tatactatatactttatatttatatctggataggcagatgctgtgtatttggatcatatcgtacgaagttgacagagtgtatgttttgaagcaggttct |
15986419 |
T |
|
| Q |
215 |
tattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagtc |
314 |
Q |
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| T |
15986420 |
tattattgatcatgcagatgtaatgacaatgcaggttagcattctttgtttaaattattgcagaaaattgactttacccatgatttgaactacagtag-c |
15986518 |
T |
|
| Q |
315 |
ctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagatg |
414 |
Q |
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| T |
15986519 |
cagtttctcattattgttgaaacttgtcagaattggtctcatgtgcgtccagttattgaacacttgaaccgcttaccatctacgccgcccagaacagatg |
15986618 |
T |
|
| Q |
415 |
ttatgcgcattagaccatggtatattctatttgccttttcttc |
457 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
15986619 |
ttatgcgcattagaccatggtatattctatttggcttttcttc |
15986661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 182 - 385
Target Start/End: Complemental strand, 23727603 - 23727396
Alignment:
| Q |
182 |
agttgacaaagtgaatgt-ttttaagcaggttcttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaa |
280 |
Q |
| |
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|||||||| |||| |||| |||||| ||| |||| ||||||||||| |||||| |||| |||||||||||| | ||| | ||||||||||||||||| || |
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| T |
23727603 |
agttgacagagtgtatgtcttttaaccagattctcattattgatcacgcagatataatagcaatgcaggtttgtattatatgtttaaattattgcaacaa |
23727504 |
T |
|
| Q |
281 |
attgacttttcccatgatttgaactac---agtagtcctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacac |
377 |
Q |
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||||||||| |||||||||||||| || | | | |||||||||||||||||||| |||||||| ||||||||||||| |||| ||||| |||| |
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| T |
23727503 |
attgactttacccatgatttgaacgacgctatgaattgtgtttctcattattgttgaaacttgtcaggattggtctcatgttaataccattattcaacag |
23727404 |
T |
|
| Q |
378 |
ttaaaccg |
385 |
Q |
| |
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|||||||| |
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| T |
23727403 |
ttaaaccg |
23727396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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