View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_10 (Length: 320)
Name: NF10581_low_10
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 40093199 - 40093494
Alignment:
| Q |
9 |
tggacatcaagttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
108 |
Q |
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| T |
40093199 |
tggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
40093298 |
T |
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| Q |
109 |
atatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
208 |
Q |
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| T |
40093299 |
atatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
40093398 |
T |
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| Q |
209 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattctttt |
304 |
Q |
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| T |
40093399 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattctttt |
40093494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 40062542 - 40062803
Alignment:
| Q |
9 |
tggacatcaagttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaa-----cat |
103 |
Q |
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| T |
40062542 |
tggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactatatctaagctaacat |
40062641 |
T |
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| Q |
104 |
gaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
203 |
Q |
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| T |
40062642 |
gaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaaca |
40062741 |
T |
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| Q |
204 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact |
265 |
Q |
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| T |
40062742 |
ctcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagact |
40062803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 51 - 278
Target Start/End: Original strand, 40080933 - 40081166
Alignment:
| Q |
51 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
145 |
Q |
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| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
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| Q |
146 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
245 |
Q |
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| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
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| Q |
246 |
tt-cacttttgatcgaagactatttattagtctt |
278 |
Q |
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| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctt |
40081166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 40080866 - 40080912
Alignment:
| Q |
9 |
tggacatcaagttcagcttttcttgtttttagtttccaattatgcat |
55 |
Q |
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| T |
40080866 |
tggacttcaggttcagcttttcttgtttttagtttctaaatatgcat |
40080912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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