View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10581_low_11 (Length: 312)
Name: NF10581_low_11
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 36310031 - 36310295
Alignment:
| Q |
1 |
tgggagttttccttcggtgcattttcatgttcctggccaaaatgcaaaaggagaggaaggaatatttgttttgatttccttacctactaaagttatgaca |
100 |
Q |
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| T |
36310031 |
tgggagttttccttcggtgcattttcatgttcctggccaaaatgcaaaaggagaggaaggaatatttgttttgatttccttacctactaaagttatgaca |
36310130 |
T |
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| Q |
101 |
gcttttgccaaagagttggatgacttaattgcagcaacaaattaagccaccttatctatttttagattgtctatttgaaaccgcaaataataaagtctga |
200 |
Q |
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| T |
36310131 |
gcttttgccaaagagttggatgacttaattgcagcaacaaattaagccactttatctatttttagaatgtctatttgaaaacgcaaataataaagtctga |
36310230 |
T |
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| Q |
201 |
gagtggttacgttgtttgcattcaagctcnnnnnnnacgcaatggttggcttgttgtggatttggt |
266 |
Q |
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| T |
36310231 |
gagtggttacgttgtttgcattcaagctctttgtttatgcaatggttggctt-ttgtggatttggt |
36310295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 36310376 - 36310407
Alignment:
| Q |
268 |
taatctagaccatccattttgatattaatggt |
299 |
Q |
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| T |
36310376 |
taatctagaccatccattttgatattaatggt |
36310407 |
T |
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