View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10581_low_12 (Length: 308)

Name: NF10581_low_12
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10581_low_12
NF10581_low_12
[»] chr4 (5 HSPs)
chr4 (1-293)||(26720766-26721058)
chr4 (18-168)||(8541278-8541428)
chr4 (131-293)||(44161950-44162123)
chr4 (17-101)||(37618670-37618754)
chr4 (57-103)||(44161166-44161212)
[»] chr1 (5 HSPs)
chr1 (4-255)||(45117904-45118155)
chr1 (106-197)||(19769218-19769309)
chr1 (17-101)||(6919885-6919971)
chr1 (17-101)||(38239906-38239992)
chr1 (252-293)||(19769317-19769358)
[»] chr2 (3 HSPs)
chr2 (16-255)||(2985921-2986160)
chr2 (79-293)||(10495878-10496097)
chr2 (4-49)||(2985882-2985927)
[»] scaffold0036 (1 HSPs)
scaffold0036 (100-293)||(98110-98308)
[»] scaffold0004 (1 HSPs)
scaffold0004 (124-293)||(246442-246616)
[»] chr8 (3 HSPs)
chr8 (18-168)||(23820613-23820763)
chr8 (18-168)||(40172843-40172993)
chr8 (239-293)||(16359240-16359294)
[»] chr3 (2 HSPs)
chr3 (39-101)||(53537276-53537338)
chr3 (50-90)||(53689636-53689676)
[»] scaffold0361 (1 HSPs)
scaffold0361 (237-293)||(9262-9318)
[»] scaffold0275 (1 HSPs)
scaffold0275 (47-117)||(23003-23073)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26720766 - 26721058
Alignment:
1 gaagcggagaagaagctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
26720766 gaagcggagaagaagctttcactctcttccatgtcttctctactttcacagttgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgt 26720865  T
101 cagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
26720866 cagtagtgaattttctcttgcgaccacctctctaggtctcttcatcccgttgcctcttttgattcccgttcattcaacaccaacaccatgcgccagtgcg 26720965  T
201 aggaacactcagatgagtccaatgtttccgattgtcgttgatggctctttccctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
26720966 aggaacactcagatgagtccaatgtttccgattgtcgttgatggctctttccctcacactcgccgcgacgatttcctctcaggtagttgttat 26721058  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 8541278 - 8541428
Alignment:
18 ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| ||| |||  ||||| |||||||||||||||||||||||||  ||| ||||||||    
8541278 ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgacctccaccgtcagcggtggattttctc 8541377  T
118 ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg 168  Q
     |||| |||||||||||| ||||| | ||| |||||||||| || ||||||    
8541378 ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 8541428  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 44161950 - 44162123
Alignment:
131 tctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaac------accatgcgccagtgcgaggaacactcagatgagtccaatg 224  Q
    |||||||||||   ||||||||| |||| |||||||||||||||||||||||||      |||||||||||||  || |||||||| |||||||||||||    
44161950 tctaggtctctatgtcccgttgcttcttccgcttcccgttcattcaacaccaacatcaacaccatgcgccagtatgatgaacactctgatgagtccaatg 44162049  T
225 tttccgattgtcgt-----tgatggctctttccctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    || ||||| |||||     |||| |||||||||||| ||||  ||||||| |||||||||| ||||||||||||    
44162050 ttgccgatcgtcgtcgtgctgatcgctctttccctcgcactctccgcgacaatttcctctccggtagttgttat 44162123  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 37618754 - 37618670
Alignment:
17 tttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||| ||  ||||||||    
37618754 tttcactctcttccatgtcttttctactttcaccgtcgtatttctcctctcatccctcgccgtcgtcgactcaactgccaccgtc 37618670  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 44161166 - 44161212
Alignment:
57 tttctcctcttatccctcgccttcgtcgactcgacctccaccgtcag 103  Q
    |||||||||| |||||| ||| |||||||||||||| ||||||||||    
44161166 tttctcctctcatccctggccgtcgtcgactcgaccgccaccgtcag 44161212  T

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Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 45118155 - 45117904
Alignment:
4 gcggagaagaagctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcag 103  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
45118155 gcggaggagaagctttcactctcttccatgtcttctctactttcacaatcgtatttctcctctcatccctcgccttcgtcgactcgacctccaccgtcag 45118056  T
104 tagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgagg 203  Q
      |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
45118055 cggtgaattttctcctgcagcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtacgagg 45117956  T
204 aacactcagatgagtccaatgtttccgattgtcgttgatggctctttccctc 255  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||    
45117955 aacactcagacaagtccaatgtttccgatcgtcgttgatggctcttttcctc 45117904  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 19769218 - 19769309
Alignment:
106 gtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagt 197  Q
    |||||||||||| | || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
19769218 gtgaattttctcctccggcctcctctctaggtctctccttcccgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagt 19769309  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 6919885 - 6919971
Alignment:
17 tttcactctcttcaat--gtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||| ||  ||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| ||||||||    
6919885 tttcactctcttccatacgtcttttctactttcacaatcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc 6919971  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 38239992 - 38239906
Alignment:
17 tttcactctcttcaat--gtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||| ||  ||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| ||||||||    
38239992 tttcactctcttccatacgtcttttctactttcacaatcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc 38239906  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 19769317 - 19769358
Alignment:
252 cctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
19769317 cctcgcactcgccgcgacgatttcctctcaggtagttgttat 19769358  T

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Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 2985921 - 2986160
Alignment:
16 ctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttc 115  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
2985921 ctttcactctcttccatgtcttctctactttcacaatcgtatttctcctctcatccctcgccttcgtcgactcgacctccaccgtcagcggtgaattttc 2986020  T
116 tcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgaggaacactcagatg 215  Q
    || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
2986021 tcctgctgcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacatcatgcgccagtacgaggaacactcagatg 2986120  T
216 agtccaatgtttccgattgtcgttgatggctctttccctc 255  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
2986121 agtccaatgtttccgatcgtcgttgatggctcttttcctc 2986160  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 293
Target Start/End: Complemental strand, 10496097 - 10495878
Alignment:
79 tcgtcgactcgacctccaccgtcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaac 178  Q
    |||| ||||||||| |||||||||    |||||||||||  ||| |||||||| |||||||||  |||||||||||||||  | ||||||||||||||||    
10496097 tcgttgactcgaccgccaccgtcaacgttgaattttctcccgcggcctcctctataggtctctctatcccgttgcctcttctgtttcccgttcattcaac 10495998  T
179 accaacaccatgcgccagtgcgaggaacactcagatgagtccaatgtttccgattgtcgt-----tgatggctctttccctcacactagccgcgacgatt 273  Q
    || |||||||||||| ||| ||| ||||||||  |||||||||||||| | ||| |||||     |||| |||||||||||| ||||  |||||||||||    
10495997 actaacaccatgcgctagtacgatgaacactctaatgagtccaatgttgctgatcgtcgtcgcgctgatcgctctttccctcgcactttccgcgacgatt 10495898  T
274 tcctctcaggtagttgttat 293  Q
    ||||||||||||||||||||    
10495897 tcctctcaggtagttgttat 10495878  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 2985882 - 2985927
Alignment:
4 gcggagaagaagctttcactctcttcaatgtcttctctactttcac 49  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
2985882 gcggagaagaagctttcactctcttccatgtcttctctactttcac 2985927  T

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Target: scaffold0036 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 98110 - 98308
Alignment:
100 tcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgc 199  Q
    |||| ||||||||||||| |  | ||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |    
98110 tcagcagtgaattttctcctctggcctcctctctaggtctctctgtcccgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagtac 98209  T
200 gaggaacactcagatgagtccaatgtttccgattgtcgt-----tgatggctctttccctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    || |||||||| ||| ||||||||||| ||||| |||||     | || |||||||| ||  |||| ||||||||||||||||||||||| ||||||||    
98210 gacgaacactctgataagtccaatgttgccgatcgtcgtcacgcttatcgctctttctcttgcactggccgcgacgatttcctctcaggtggttgttat 98308  T

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Target: scaffold0004 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 293
Target Start/End: Original strand, 246442 - 246616
Alignment:
124 cctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgaggaacactcagatgagtccaat 223  Q
    ||||||||| |||||||| | ||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||| ||| ||||| ||||||    
246442 cctcctctccaggtctctccgtcctgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagtacgacgaacgctccgatgattccaat 246541  T
224 gtttccgattgtcgt-----tgatggctctttccctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    ||| |||||| ||||      ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||    
246542 gttgccgattctcgtcgtgccgatcgctctttccctcgcactcgccgcgacgatttcctctcaggtagttgttat 246616  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 23820613 - 23820763
Alignment:
18 ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| ||| |||  ||||| |||||||||||||| ||||||||||  ||| ||||||||    
23820613 ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgaccgccaccgtcagcggtggattttctc 23820712  T
118 ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg 168  Q
     |||| |||||||||||| ||||| | ||| |||||||||| || ||||||    
23820713 ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 23820763  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 40172993 - 40172843
Alignment:
18 ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| ||| |||  ||||| |||||||||||||| ||||||||||  ||| ||||||||    
40172993 ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgaccgccaccgtcagcggtggattttctc 40172894  T
118 ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg 168  Q
     |||| |||||||||||| ||||| | ||| |||||||||| || ||||||    
40172893 ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 40172843  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 16359240 - 16359294
Alignment:
239 tgatggctctttccctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    |||| |||||||||||  |||| ||||| ||||||||||||||||||||||||||    
16359240 tgatcgctctttcccttgcactcgccgcaacgatttcctctcaggtagttgttat 16359294  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 53537276 - 53537338
Alignment:
39 tctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||| |||| ||||||||    
53537276 tctactttcacagtcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc 53537338  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 53689636 - 53689676
Alignment:
50 agtcgtatttctcctcttatccctcgccttcgtcgactcga 90  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
53689636 agtcgtatttctcctcccatccctcgccgtcgtcgactcga 53689676  T

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Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 9318 - 9262
Alignment:
237 gttgatggctctttccctcacactagccgcgacgatttcctctcaggtagttgttat 293  Q
    |||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||    
9318 gttgatagctctttccctcgcactcgccgcaacgatttcctctcaggtagttgttat 9262  T

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Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 23003 - 23073
Alignment:
47 cacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||||||||||| |||||| | | |||| |||| |||| ||||||||||  ||||||||||||    
23003 cacagtcgtatttctcctctcatccctggtcgtcgtggacttgaccgccaccgtcagcggtgaattttctc 23073  T

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