View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10581_low_13 (Length: 287)
Name: NF10581_low_13
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10581_low_13 |
 | |
|
| [»] scaffold0777 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 8284599 - 8284342
Alignment:
| Q |
19 |
tttgatgaccagagttttgttgtgtttctcgtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284599 |
tttgatgaccagagttttgttgtgtttctcgtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagac |
8284500 |
T |
|
| Q |
119 |
attggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284499 |
attggcatcaccaacttgaccaaactcttgtaattgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcg |
8284400 |
T |
|
| Q |
219 |
agaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284399 |
agaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctct |
8284342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 34694601 - 34694420
Alignment:
| Q |
91 |
acttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggtt |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |||| |||| |||||||||||||| |||| || || || |||| || |
|
|
| T |
34694601 |
acttgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaatctcatctctacgtggatt |
34694502 |
T |
|
| Q |
191 |
caccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagtt |
272 |
Q |
| |
|
| | |||||||||| | |||||||| |||||| | ||||| | ||||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
34694501 |
cgtcgtccctgagttatagatggcttcaagaatgtggatttgctcaggttttgggatccatcttggccttggtccaggagtt |
34694420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 34686670 - 34686497
Alignment:
| Q |
90 |
gacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| ||| ||||| ||||||||| |||| ||||||||| | ||||| || ||||| | |
|
|
| T |
34686670 |
gacttgcggttttgaaaccagtaaaagacactcgcatcaccaatttgtccaaattcttgtaattgttctcgtatcttcttgatttcatctacaggtggat |
34686571 |
T |
|
| Q |
190 |
tcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggt |
263 |
Q |
| |
|
|| ||||||||||||| | |||||||| |||||||| ||||| | || ||||| ||||||||||| ||||| |
|
|
| T |
34686570 |
tcttcatccctgagttgtagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggccttggt |
34686497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 34682484 - 34682347
Alignment:
| Q |
29 |
agagttttgttgtgtttctcgtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatca |
128 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | || |||||||||||||||||||| || || |||||||||||||||||| | ||||| || || |
|
|
| T |
34682484 |
agagttttgttgtgtttttagtttcttgttgtacaagattcttttcttttgtttgcttctggagttacggttttgaaaccagtaagaaacattaacagca |
34682385 |
T |
|
| Q |
129 |
ccaacttgaccaaactcttgtaatcgttcacgtatctt |
166 |
Q |
| |
|
|||||||| |||||| |||||| | ||||| ||||||| |
|
|
| T |
34682384 |
ccaacttgtccaaacccttgtagttgttcatgtatctt |
34682347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 34681338 - 34681302
Alignment:
| Q |
240 |
tttgggttccatcttggctttggttctggagttctct |
276 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
34681338 |
tttgggttccatctaggctttggttttggagttctct |
34681302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 276
Target Start/End: Complemental strand, 4393502 - 4393319
Alignment:
| Q |
93 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttca |
192 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||||||||||||| ||||||| || || | | |||||| | ||||| || |||||||| |||| |
|
|
| T |
4393502 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
4393403 |
T |
|
| Q |
193 |
ccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctct |
276 |
Q |
| |
|
|||| || || ||||| || ||||| || ||||| ||||||| ||||||||| ||||| ||||||||||| || ||| |||||| |
|
|
| T |
4393402 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttggctcaggacttctct |
4393319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 6181 - 6081
Alignment:
| Q |
32 |
gttttgttgtgtttctcgtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcacca |
131 |
Q |
| |
|
|||| ||||||||||| || ||||||||| | || ||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
6181 |
gtttggttgtgtttctggtctcttgttgtaggggattcttttcttttgtatgcttatggacttgcggttttgaaacgagtaaaagacgctagcatcacca |
6082 |
T |
|
| Q |
132 |
a |
132 |
Q |
| |
|
| |
|
|
| T |
6081 |
a |
6081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 5781 - 5667
Alignment:
| Q |
147 |
tgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggt |
246 |
Q |
| |
|
|||||| ||||| ||||||| |||| || || ||| |||| |||||||||||||||||||| | | ||||||||||||| ||||| | | ||||| | |
|
|
| T |
5781 |
tgtaattgttcatgtatcttattaatctcatctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggat |
5682 |
T |
|
| Q |
247 |
tccatcttggctttg |
261 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5681 |
tccatcttggctttg |
5667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University