View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10581_low_15 (Length: 276)

Name: NF10581_low_15
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10581_low_15
NF10581_low_15
[»] chr8 (3 HSPs)
chr8 (35-157)||(11325970-11326092)
chr8 (210-253)||(11325937-11325980)
chr8 (238-269)||(11325907-11325938)
[»] chr1 (3 HSPs)
chr1 (94-242)||(19175353-19175501)
chr1 (97-229)||(42953804-42953936)
chr1 (154-220)||(47994961-47995027)
[»] chr5 (1 HSPs)
chr5 (100-228)||(17108229-17108357)
[»] chr6 (2 HSPs)
chr6 (98-230)||(25076823-25076955)
chr6 (97-230)||(28951551-28951684)
[»] chr7 (1 HSPs)
chr7 (97-204)||(26337399-26337505)
[»] chr3 (2 HSPs)
chr3 (141-232)||(38547598-38547689)
chr3 (103-227)||(32773790-32773914)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 11326092 - 11325970
Alignment:
Q  35 tattcttcatatttattcttacaaatagttatcattttatctcaagaacaataagtttcttcgtgtgtgtttgtcatcacgttttcaactttaattgcgc 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11326092 tattcttcatatttattcttacaaatagttatcattttatctcaagaacaataagtttcttcgtgtgtgtttgtcaacacgttttcaactttaattgcgc 11325993  T
Q  135 tttcccatgcagttccaccgtga 157  Q
    |||||||||||||||||||||||    
T  11325992 tttcccatgcagttccaccgtga 11325970  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 11325980 - 11325937
Alignment:
Q  210 ttccaccgtgatggcaaacagactattcatctccatcattgaat 253  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  11325980 ttccaccgtgatggcaaacagacaattcatctccatcattgaat 11325937  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 269
Target Start/End: Complemental strand, 11325938 - 11325907
Alignment:
Q  238 atctccatcattgaatatatgatattcatctc 269  Q
    ||||||||||||||||||||||||||||||||    
T  11325938 atctccatcattgaatatatgatattcatctc 11325907  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 19175353 - 19175501
Alignment:
Q  94 ttcgtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaa 193  Q
    |||||||||||||| |||||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  19175353 ttcgtgtgtgtttgccatcacgttggcaactttaattgcgcttcctcatgcagttccaccgtgaaaatagtgaagctctaaattggagagtttgacaaaa 19175452  T
Q  194 catggttttggtgggtttccaccgtgatggcaaacagactattcatctc 242  Q
    | |||||||||||||| ||||||| ||||||||||||||  ||||||||    
T  19175453 cgtggttttggtgggtatccaccgggatggcaaacagacccttcatctc 19175501  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 42953804 - 42953936
Alignment:
Q  97 gtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacat 196  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||||||||  |    
T  42953804 gtgtgtgtttgccatcatgtttgcaactttaattgcgctttcccatgcagtttcaccatgaaaatagtgaagctccaaatcggagagtttggcaaaatgt 42953903  T
Q  197 ggttttggtgggtttccaccgtgatggcaaaca 229  Q
    ||||||||||||| ||||| |||||||||||||    
T  42953904 ggttttggtgggtatccactgtgatggcaaaca 42953936  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 47995027 - 47994961
Alignment:
Q  154 gtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggttttggtgggtttccaccgtga 220  Q
    |||||||||| |||||| ||| ||||||||||||| ||||| | | |||||||||| ||||||||||    
T  47995027 gtgaaaatagagaagctccaatttggagagtttggaaaaacgttggtttggtgggtatccaccgtga 47994961  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 17108357 - 17108229
Alignment:
Q  100 tgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggt 199  Q
    |||||||| |||||| ||| ||||||||||||||||| ||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||    
T  17108357 tgtgtttgccatcacatttgcaactttaattgcgcttccccgtgcagttccaccgtaaaaatagtgaagttttaaattggagagtttggcaaaacgtggt 17108258  T
Q  200 tttggtgggtttccaccgtgatggcaaac 228  Q
    |||||||||| || |||||||||| ||||    
T  17108257 tttggtgggtatcgaccgtgatggtaaac 17108229  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 25076823 - 25076955
Alignment:
Q  98 tgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatg 197  Q
    |||||||||| |||||| ||||| ||||||||||| | | || || |||||||||||| ||||||  |||||| ||||||||||||||| | ||||  ||    
T  25076823 tgtgtgtttgccatcacattttctactttaattgcacgtcccaatacagttccaccgtcaaaataaagaagctccaaattggagagtttagaaaaaggtg 25076922  T
Q  198 gttttggtgggtttccaccgtgatggcaaacag 230  Q
    |||||||||||   |||||||||||||||||||    
T  25076923 gttttggtgggcacccaccgtgatggcaaacag 25076955  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 28951684 - 28951551
Alignment:
Q  97 gtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacat 196  Q
    ||||||||||| |||||||||||||||||||||||  | | |  ||||||| ||||| | ||||||   |||||  |||||||||||||||  ||||| |    
T  28951684 gtgtgtgtttgccatcacgttttcaactttaattgtccgtccaaatgcagtcccaccctcaaaataaaaaagctctaaattggagagtttgaaaaaacgt 28951585  T
Q  197 ggttttggtgggtttccaccgtgatggcaaacag 230  Q
    ||||||||| ||  ||||||||||||||||||||    
T  28951584 ggttttggtaggcatccaccgtgatggcaaacag 28951551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 26337505 - 26337399
Alignment:
Q  97 gtgtgtgtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacat 196  Q
    ||||||||||| |||||| ||| ||||||||||||||||| |||||  |||||||||||||||||| |||||||  ||||||||||| ||| |||||  |    
T  26337505 gtgtgtgtttgccatcacatttgcaactttaattgcgctt-cccatagagttccaccgtgaaaataatgaagctctaaattggagagattgacaaaatgt 26337407  T
Q  197 ggttttgg 204  Q
    ||||||||    
T  26337406 ggttttgg 26337399  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 38547598 - 38547689
Alignment:
Q  141 atgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggttttggtgggtttccaccgtgatggcaaacagac 232  Q
    ||||||||||||||| |||||||||||| |  | ||||||||||||||||||   |||||||||||||| |||||||||||| |||||||||    
T  38547598 atgcagttccaccgtaaaaatagtgaagttctatattggagagtttggcaaagtgtggttttggtgggtatccaccgtgatgtcaaacagac 38547689  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 32773914 - 32773790
Alignment:
Q  103 gtttgtcatcacgttttcaactttaattgcgctttcccatgcagttccaccgtgaaaatagtgaagcttcaaattggagagtttggcaaaacatggtttt 202  Q
    ||||| |||||| ||||| |||||||||| || | || || |||||||||||| |||| |  |||||| ||||||||||||||| | ||||| |||||||    
T  32773914 gtttgccatcacattttctactttaattgtgcgtcccaatacagttccaccgtcaaaagaaagaagctccaaattggagagtttagaaaaacgtggtttt 32773815  T
Q  203 ggtgggtttccaccgtgatggcaaa 227  Q
    ||||||   ||||||||||||||||    
T  32773814 ggtgggcacccaccgtgatggcaaa 32773790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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