View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10581_low_2 (Length: 419)

Name: NF10581_low_2
Description: NF10581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10581_low_2
NF10581_low_2
[»] chr4 (3 HSPs)
chr4 (18-145)||(1425394-1425521)
chr4 (197-235)||(52480959-52480997)
chr4 (264-296)||(22326542-22326574)
[»] chr1 (2 HSPs)
chr1 (188-296)||(26084512-26084620)
chr1 (197-235)||(23859958-23859996)
[»] chr8 (3 HSPs)
chr8 (188-295)||(28502747-28502854)
chr8 (188-295)||(28510305-28510412)
chr8 (188-296)||(18757603-18757711)
[»] chr6 (3 HSPs)
chr6 (188-297)||(24678534-24678643)
chr6 (188-295)||(24689126-24689233)
chr6 (197-235)||(7410885-7410923)
[»] chr2 (4 HSPs)
chr2 (190-295)||(38850929-38851034)
chr2 (188-296)||(35336456-35336564)
chr2 (188-235)||(40064594-40064641)
chr2 (197-295)||(23740652-23740750)
[»] scaffold0624 (1 HSPs)
scaffold0624 (192-296)||(2229-2333)
[»] scaffold0427 (1 HSPs)
scaffold0427 (188-295)||(118-225)
[»] chr7 (4 HSPs)
chr7 (197-298)||(13820221-13820322)
chr7 (200-235)||(12512408-12512443)
chr7 (197-235)||(12768670-12768708)
chr7 (197-235)||(24859276-24859314)
[»] chr5 (2 HSPs)
chr5 (197-296)||(23761181-23761280)
chr5 (197-296)||(23826642-23826741)
[»] chr3 (2 HSPs)
chr3 (188-295)||(23007173-23007280)
chr3 (188-295)||(49432898-49433005)
[»] scaffold0594 (1 HSPs)
scaffold0594 (188-237)||(6794-6843)
[»] scaffold0081 (1 HSPs)
scaffold0081 (296-346)||(6907-6957)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 1425521 - 1425394
Alignment:
Q  18 aatagaaaagttcaagtaagacatcgagttatattgtagtgattggcaggagaatttaaagtttttggatttggagaggtagattacatattgcatattt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1425521 aatagaaaagttcaagtaagacatcgagttatattgcagtgattggcaggagaatttaaagtttttggatttggagaggtagattacatattgcatattt 1425422  T
Q  118 agattacatatgaagatgcaacatgtat 145  Q
    ||||||||||||||||||||||||||||    
T  1425421 agattacatatgaagatgcaacatgtat 1425394  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 52480959 - 52480997
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  52480959 tgctttccgacgaaaatttcgtcgctaattcgtaggaaa 52480997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 22326574 - 22326542
Alignment:
Q  264 ctttgtagaaaaattcaatatttcttgtagtga 296  Q
    |||||||| ||||||||||||||||||||||||    
T  22326574 ctttgtaggaaaattcaatatttcttgtagtga 22326542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 296
Target Start/End: Original strand, 26084512 - 26084620
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  26084512 actgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 26084611  T
Q  288 ttgtagtga 296  Q
    |||||||||    
T  26084612 ttgtagtga 26084620  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 23859958 - 23859996
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  23859958 tgctttccgacgaatatttcgtcgctaattcgtaggaaa 23859996  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 28502747 - 28502854
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  28502747 actgacatgtgctttcctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 28502846  T
Q  288 ttgtagtg 295  Q
    ||||||||    
T  28502847 ttgtagtg 28502854  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 28510305 - 28510412
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  28510305 actgacatgtgctttcctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 28510404  T
Q  288 ttgtagtg 295  Q
    ||||||||    
T  28510405 ttgtagtg 28510412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 18757711 - 18757603
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||| ||||||||  ||||||||||||||||||||| |||||||||        | ||||| |||| | |||| ||||||| ||||| |||||||||    
T  18757711 actgacaggtgctttccaacgaaaatttcgtcgctaatttgtaggaaactactttctaagaaatttcgtcggaaaattttgtaggaaaatccaatatttc 18757612  T
Q  288 ttgtagtga 296  Q
    ||| |||||    
T  18757611 ttgcagtga 18757603  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 24678534 - 24678643
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||||||||  |||||| |||||| | ||||||||||||||||       ||||||| |||| ||||| |||||||| |||||||||||||||    
T  24678534 actgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaaccctttcctaggaaatttcgtcgaaaatctttgtaggaaaattcaatatttc 24678633  T
Q  288 ttgtagtgat 297  Q
    ||||||||||    
T  24678634 ttgtagtgat 24678643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 24689126 - 24689233
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||||||||  |||||| |||||| | ||||||||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  24689126 actgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaaccctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 24689225  T
Q  288 ttgtagtg 295  Q
    ||||||||    
T  24689226 ttgtagtg 24689233  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 7410885 - 7410923
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  7410885 tgctttccgacgaaaatttcgtcggtaattcgtaggaaa 7410923  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 38850929 - 38851034
Alignment:
Q  190 tgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttctt 289  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| |       ||||||| |||| | ||| |||||||| |||||||||||||||||    
T  38850929 tgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaatctttttttaggaaatttcgtcggaaatctttgtaggaaaattcaatatttctt 38851028  T
Q  290 gtagtg 295  Q
    ||||||    
T  38851029 gtagtg 38851034  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 35336564 - 35336456
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||        ||||||| || | | |||  || |||||||||| |||||||||    
T  35336564 actgacatgtgttttccgacgaatatttcgtcgctaattcgtaggaaacaaactcctaggaaatttcctcggaaagtttagtagaaaaatccaatatttc 35336465  T
Q  288 ttgtagtga 296  Q
    |||||||||    
T  35336464 ttgtagtga 35336456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 40064641 - 40064594
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  40064641 actgacatttgctttccgacgaaaatttcgtcgctaattcgtaggaaa 40064594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 295
Target Start/End: Complemental strand, 23740750 - 23740652
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtg 295  Q
    ||||||| ||||||||||||||||||||||||||||||| |       ||||||| |||| | |||| ||||||| ||||| ||  |||||||||||||    
T  23740750 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaaattttgtaggaaaatccaccatttcttgtagtg 23740652  T

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Target: scaffold0624 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 2333 - 2229
Alignment:
Q  192 acatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgt 291  Q
    ||||||||||||  |||||||||||||||||||||||||| |||||       ||||||| |||| |||||  ||||||| |||||||||||||||||||    
T  2333 acatgtgctttcctacgaaaatttcgtcgctaattcgtagaaaacctttttctaggaaatttcgtcgaaaatttttgtaggaaaattcaatatttcttgt 2234  T
Q  292 agtga 296  Q
    |||||    
T  2233 agtga 2229  T

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Target: scaffold0427 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 118 - 225
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||||||||||||  |||||| |||||| | ||||||||||||||||       ||||||| |||| | ||| |||||||| |||||||||||||||    
T  118 actgacatgtgctttcctacgaaagtttcgtagataattcgtaggaaaccctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaatatttc 217  T
Q  288 ttgtagtg 295  Q
    ||||||||    
T  218 ttgtagtg 225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 13820322 - 13820221
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtga 296  Q
    ||||||| |||||||||||||||||||||||||||||||||       ||||||| |||| | |||  ||||||| ||||| || |||||||||||||||    
T  13820322 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgtagtga 13820223  T
Q  297 tt 298  Q
    ||    
T  13820222 tt 13820221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 12512408 - 12512443
Alignment:
Q  200 tttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    |||| |||||||||||||||||||||||||||||||    
T  12512408 tttccgacgaaaatttcgtcgctaattcgtaggaaa 12512443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 12768670 - 12768708
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12768670 tgctttccgacgaaaatttcgtcggtaattcgtaggaaa 12768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 24859314 - 24859276
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaa 235  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  24859314 tgctttccgacgaatatttcgtcgctaattcgtaggaaa 24859276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 296
Target Start/End: Complemental strand, 23761280 - 23761181
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtga 296  Q
    ||||||| ||||||||||||||||||||||||||||||| |       ||||||| |||| | |||  ||||||| ||||| || |||||||||||||||    
T  23761280 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgtagtga 23761181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 296
Target Start/End: Complemental strand, 23826741 - 23826642
Alignment:
Q  197 tgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttcttgtagtga 296  Q
    ||||||| ||||||||||||||||||||||||||||||| |       ||||||| |||| | |||  ||||||| ||||| || |||||||||||||||    
T  23826741 tgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatccagtatttcttgtagtga 23826642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 23007280 - 23007173
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||       ||||||| |||| | |||  ||||||| |||||  | ||||||    
T  23007280 actgacagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatctagtatttc 23007181  T
Q  288 ttgtagtg 295  Q
    ||||||||    
T  23007180 ttgtagtg 23007173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 49433005 - 49432898
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaaccnnnnnnnaggaaatctcgttgaaaaactttgtagaaaaattcaatatttc 287  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||||||        ||||||  |||| | |||| |||||||||||||  ||||||||    
T  49433005 actgacaagtgctttccgacgaaaacttcgtcgctaattcgtaggaaactactttctaggaaacttcgtcgtaaaattttgtagaaaaatctaatatttc 49432906  T
Q  288 ttgtagtg 295  Q
    || |||||    
T  49432905 ttttagtg 49432898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 6843 - 6794
Alignment:
Q  188 actgacatgtgctttctgacgaaaatttcgtcgctaattcgtaggaaacc 237  Q
    |||||||  ||||||| ||||||| |||||||||||||||||||||||||    
T  6843 actgacagttgctttccgacgaaattttcgtcgctaattcgtaggaaacc 6794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 6907 - 6957
Alignment:
Q  296 attgtgcagttttgttatcaaaagcatggatatcctaactcaattaagccc 346  Q
    |||||| ||||||| ||||||||||||||||| ||||||||| | ||||||    
T  6907 attgtggagttttgctatcaaaagcatggataccctaactcattcaagccc 6957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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